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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0134500.1

GTATGTGTGTGTTTAGATTTATTAACATCTATATAAATGTGAGCAATACTAAAAATTCTTATAACCTGAAACGTAGGAAATAATAATTAAGGTGCCAAAGTCTAGGTTTTCTTTCTATCGCTATATATATATATGTACGTAGTAGTATACTATATATAGGATCATATCGATCGGTCGCCGGCCGGCGGCGTGCGTCTAGCTGCTGGAGCGGAGGCCGGCGGCGACGGCGATGGCGATGCAGTTGCTGGCGAGCTTGGCGAGCTCGGCGTCCTGCTTGGACATGAGCGGCGGGATGTCGCCGTCGCGTTCCTCGAAGCCCTGGTCGCAGGTGTCGACGTCGGTGCGGGCCGTGTCGAGCATGGTGCCCGTCGTGTCCTTGTCGCCGGCGGCCATGGCCTTGTCGGCCTCGTCGAGGCTGTACGCGATGTCGTCGTACGAGTCCATGCAGTCCCGGAGCACCGGCTTCGCCAGCGCCGGCGTCCTCGCGTCCGCGGCGAGCGCCCCCGCCGCCTTCTTCGCCGCCGCCGCCTTGGCGCGCACCGCGCCCATCGCCAGCCGCAGCACCGCCGTGGCGTCCAGCTTCGCCGCCGCCCCCGCCGCCGGCGGCGGCACCACCGTCATCTGGCACACCACCGGGTAGTCCGTCTTCGCGCACAGCGCCTTCACGAGGTCGCCGCCGGGGCCGGGAAGGATCGGCTTCGCCTTCGGCGGCGACGCCATGGCGACGAGATGGAGGTTGCAAAATTGCAGTGGTTGTGATTAACTGTTACTAATAATAATTTGATGGATTTTTTTGTATTTATTTGAATATGGAGGGAAAGGAGGAGATTAGTTGGCTTTGGCTGCATTTTTTTTCCCGGGAAAAGTGGGGGCAATGGTGGCCAGTGGTAAGTAACTGCTATTTTTGGATAAAAATAGTAAAAGTGGTGATTAGGCGCCTAACTTTGCCATTTTGGTTGTATCATTGGCATGAATGAGAAGATTAAGAGGATTATTGCAGAGGAAGATGAAGGGGAAGGGATTGGATATATTGGATCTATATGATCTTGGTGATTAATTGCTCTTGATGAATGTAGGAGGGAATTGAAGTAGTGGAGATCAATTGTAGTAATGGAATGCTAAAAATGCAAACTAGAAAGACAGAAAAAGGCATAGCATGCTTAACTAGTGGCCTAGGTAGATTGAACATTGGCCGTAGAAAGATAGCCTTGTTCTCTTTTTTTTTTCTGTTTTTTTTTTTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.74597
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0134500.1 12 23000209 G A
Osa12LNT0134500.1 12 23000075 C T
Osa12LNT0134500.1 12 23000134 T C
Osa12LNT0134500.1 12 23000136 G T
Osa12LNT0134500.1 12 23000145 T A
Osa12LNT0134500.1 12 23000154 T G
Osa12LNT0134500.1 12 23001064 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0134500.1 osa-miR156k Cleavage 4.5 22.225 1 21
Osa12LNT0134500.1 osa-miR415 Cleavage 4.0 18.011 1 21
Osa12LNT0134500.1 osa-miR529b Cleavage 4.5 22.077 1 21
Osa12LNT0134500.1 osa-miR529b Cleavage 5.0 17.314 1 21
Osa12LNT0134500.1 osa-miR1865-3p Translation 5.0 22.017 1 24
Osa12LNT0134500.1 osa-miR2093-3p Translation 5.0 11.013 1 20
Osa12LNT0134500.1 osa-miR2866 Translation 5.0 13.835 1 20
Osa12LNT0134500.1 osa-miR1429-5p Cleavage 4.5 16.241 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0134500.1 12 Bph18(t) Resistance or Tolerance Insect resistance RM463 S15552
Osa12LNT0134500.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0134500.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus