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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0135300.1

TGGTTGTATTGTGAATACAGAGTGCCTTGCCCACTTGCATTGCATACATCAAGGACCAAGTGGCAAAAGCTATCTTGCACACTAGCTAGATACATGAAACATGAGCACACTTGCAATGTTACATAGCTGTAAATATTTAGATCCATGCTAATGATTCTTCTACAAAAGCACTTCACTTCTGCTAGGTGGATAATTAACTTGGGTAACCTAGTTCAATATATTGCTTCAATAACATGGGCCCACCCCTTTACCATAACCAAATTGTGGTGCTACCTTGATCTCATCATCCATCCTCAAGCATGTTTCTGGGCAATAGTAATCCCACATAGGATATGGCAATAGAGGACCAGATAGGCTATTGGATGCACTATCCTTTGCTTCATCAAAACATGGCCCTGGGAGCACATTTGGTGCCTCAATTTCCATCCATATCTGATCCATGGGATAACCATCCATGTCAACAGGGGTGCTTTTCATGATGCTTGTGATGCAGCCACTGCCGCCATGAAGTTCCTGCTCCTCAATTCCAATGATCATTGACGGGGTCTCTGGGTGGCAAGATTGGTATGTCAGTGAAGACGAGGATGATGAGGGTGACATGTTACTCTTCCTCTCCTGTGCTTTCTTCCTCATATGTGTCCTCCAGTAGTTCTTGATCTCATTGTCAGTACGTCCTGGCAGACGCCTTGCTATCCTGGACCACCTGTTTCCCCACCGAGCATGGAGCTCAAGGATGAGGCGCTCTTCATGCGGAGACATGCGCCCACGCTTGAGGCCAGGGTGGAGGTAGTTGACCCACCGGAGGCGGCAGCTCTTGCCTGTGCGATTAAGGCCTGCATGGAGATACAAACAGTGTGTGCAAGAAGAGAACTCGGTTAGAGATGGTGGCGTTTCCTGTTGCGACTTAGCGCGAAGGAATTCAATATAGCTACCTAATTTTTGGATCCCCCACCCCTCAAACCTGATACTTTGGCAATGAAATCCCAACGACGTTCACCGAACAATCGGACAGTGCATACCAGTTGCAGGTCCTCCTGCTCTGTCCATGGCCCTTTGCGTATCTCTTCTCTCACTGTCACCATATTGATTACCCTAGTATATGATGACAGTGTTGCACTAACGCTGCTCGCTCCTACCTTGTATCGGCTCGGAGCCGGTCTTCTTGCTCTTCTTCCACCTCTGTGTGCTTGTTGGCTCCAGCTTCAGGATGTGATCCTTGATGAACTCCAGCCTGTTCAGCAGCAGAGGAAAACTAGCTACTAGAGAGAGTAAACCACTTTGGTTTGTTTGCCCT

Coding Potentia
Explanation CPC Score
noncoding -1.14773
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0135300.1 12 23326459 C T
Osa12LNT0135300.1 12 23326650 T C
Osa12LNT0135300.1 12 23327027 G A
Osa12LNT0135300.1 12 23326846 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0135300.1 osa-miR414 Cleavage 1.5 24.511 1 21
Osa12LNT0135300.1 osa-miR416 Cleavage 5.0 15.672 1 21
Osa12LNT0135300.1 osa-miR1849 Translation 4.0 18.472 1 21
Osa12LNT0135300.1 osa-miR5071 Cleavage 3.5 20.223 1 21
Osa12LNT0135300.1 osa-miR5144-5p Cleavage 3.0 21.939 1 21
Osa12LNT0135300.1 osa-miR815a Cleavage 4.5 17.622 1 21
Osa12LNT0135300.1 osa-miR815b Cleavage 4.5 17.622 1 21
Osa12LNT0135300.1 osa-miR815c Cleavage 4.5 17.622 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0135300.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0135300.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus