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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0135500.1

GGAAGGCGGCGAGGGGCGACGGCGACCTGCCCCCGCCCGGATCCGGCGGAGGCGGCTGCCCCCTGCCCGGATCTGGCGGCGGCAGCCGTCCCTCGCCAGCATCCGGCGACGGTGGCAGCGGGCGGCGGCGGCGACGTCACCGACCACGAGGAGGGCTGCGGCGGCAGCTTCTAGGGTTTTTTTTAATCTGCCCTCTATATTTCTAACCATCCAATCGAAATCCAACGGCTCAGGTTTTCTTGCATACGTGGCACAATCACAGACCGAATAAACATCCTGCGTTCATTGATGATGATGATGATGATGATTACATCCTTCACCCTTGCCGTTTGGAACGTACCAGAATATATGAGTTTACCCTGAACAGTGAACACTTGCTGCATAGTAGTATTATCCCTGCATGAGAAATGACCAATCAAAGTATTTATGTGATTTCTCTTAAAAAAAAGTAGTATTAACGAAAGATATCCTCACAAAGAGAAAATAGAGGGGGAACAAGCAATGTTGTTGCAATGTTGTTTTTTATACACAAGAGATCATTCAACATATTTTCTTTTTTTGTCATGTTGCACGTTTTGCTTAGCGATGTGTCCTTTTTGTCTTTAATATTCCCCCTTCCCGCAATGCAAAAGTTATTTTGGG

Coding Potentia
Explanation CPC Score
noncoding -1.11081
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0135500.1 12 23440576 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0135500.1 osa-miR414 Cleavage 2.0 11.981 1 21
Osa12LNT0135500.1 osa-miR1862e Translation 4.5 13.389 1 24
Osa12LNT0135500.1 osa-miR2867-3p Cleavage 5.0 11.703 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0135500.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0135500.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus