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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0135600.1

TGTGGAAATAGGCGGTTACCCAGTTCAAGGCTCACTAGTGGTAGTACACAACACCAATGTCACATTGTTTCAAGTTAATGTTCAGCAAAAAGCAAATGACCACCAAACAAAGCAGCTCTCAAAAGACTACAACATCCTGGACTCCCAACATATGAGCACACAAACAGGCGATGTGCCATACCAAACTCATGGCAAGCACACTTAGCAATAATACAACACGCCGCTTAGGGCTTCGGTTTAATTGAAACAGCTTGGTTGGACCAGGAAGGAAGATGGAGACTGACTAGAATTGGAGGTGCTGTGGAGATCATGCAGCTATCCCATTTCGTTGGTTCAAAGTTCTGTCAGTCGCTGCGGGCAGGGGAAACATCGGCGGACCTAGAGCGGGATCCTGGAGGCGACCCTGAGGAGTGCCTAGGAGACCTCCGGTGTGGAGGGGATCCATCGCTGTCAGGTGGGGGCGACCTCTTCTCATAACCGTTATCAGCATCGCGAGGGTCGCCATCTCTACTGGCAGGAGAGTAGGATCTCCGCTTCTTCTCTTCATCATGTTCTTTTGGCTGACGCCTAGGAGATTTTGTGGGGTGCGTATCCTTTCTCGGTGGGGAAGCTGAGTAGTCATCTCGCCGTCTTGGAGCAGGAGAGTATGACCTTGACCGTGGACGACCTCGATAGTGGGGAGAGCGAGAACGGGAACGAGACCTCCCATAATATGAAGAGCGGCGCCCTTCGTTTCCAGAGTAACCCCTGACTCTAGCTCTACTGCGCATTTCCTCTGGCCTTTTCCGCGACTCAGCAGCAAGAACAACAGTTATCTCCCGGCCGAAAAACACCTGGCGATTCATGTGATATTGAGCCTCAGAGGCATCATAAGGGTCAACGAACTCCACAAATGCAAATCCCCGTGGTTCCCCGCTGTAATAATCCTTTGGCAGGTAAACATCCCGAACAGGACCAAACCTTTCAAAAGGAACTCGAAGATCCTCCCCTCTGCAGCTTAATGGGATGTTGCGGACCAAGAGACTTCCAGAACCCTGCTCCCTCCGTCCTCCATATCCCCTCCTAGGGGGACTTCTTCCTCTGCCACCATAGCCCCTCCTAGGGGGACTGCGATATGGTGGGCTGTACCTCCTCATTGTTTTGTCGCGTAGAGCTCCCGGAGAAGCCGTGCGCCGCCGCCGCCGCCGCCGCCGGAGGGGACGAAATCGGTGGGGGGATGCGG

Coding Potentia
Explanation CPC Score
noncoding -1.04322
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0135600.1 12 23590862 A G
Osa12LNT0135600.1 12 23590878 G A
Osa12LNT0135600.1 12 23591464 C T
Osa12LNT0135600.1 12 23591871 A T
Osa12LNT0135600.1 12 23591922 T C
Osa12LNT0135600.1 12 23592470 A C
Osa12LNT0135600.1 12 23592958 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0135600.1 osa-miR399a Translation 4.5 16.174 1 21
Osa12LNT0135600.1 osa-miR399b Translation 4.5 16.174 1 21
Osa12LNT0135600.1 osa-miR399c Translation 4.5 16.174 1 21
Osa12LNT0135600.1 osa-miR2118i Cleavage 4.5 19.879 1 22
Osa12LNT0135600.1 osa-miR2867-3p Translation 4.0 22.519 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0135600.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0135600.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus