>Osa12LNT0136000.1

GACATTCTGAACCTATTCATCATCAGGTGTCCAGGTTAGAGCAAAAACCATTCAGAATTTCATCTACTGCTACAACAAAACAAAATACACAGCCAAGAAAATTCTGTGCTTATTAGATTTATTGGTACAGTCCCAAAAAGAACTAATGTGCAGCAACTACAGTTCTCTAAGAGGCCACATCAAACCAATCTCAATTCTCACCCATCTAGAGCCGTTCATGCTTTAGGTAGCCAGTGTGGTCCGAGGACAATTGTCAACTGAGCAGGCCAGGATGTCCCGGTAATCGCGTGAGATTGTGAAATGATCATACACATTGCCGTCGCGGCTCTTCTTGTACTCGAATAGCATGGATGAATGATTGAAAGCCGTGAGCTTCACGAAGCCGAAGTCAAAGTCTGTGTAGTGACTCCATTTGATCTTTGAAGTGGTGAATTCTGAAAGGCTGGCACCACCACCTCCAACGACCACATGCGTCGTCGCTTTGAATGGGCCGTTGTAGTGATCCGAAGCGTTAACGACACACTGACCCTGATAAACTGGACATGTTCTTTCATAGCTGTGAACATGACCATAGAAGGCAAGATCAACTCTGTACTTTTGTAATAGCTCCTCTATTGTGTCTCGCCCCATCGGCTCCCCAAATGTACCCTGTTCTTCATAGTAGGAGCAGGATGAGTACCCAAGAACGCGGTGAGCAAGGAATATGAGCCATGGCTGCTTCTGCCTGTCGACAGATGATAGGCATTGCTCGATGAACTTGTACTGCTCGGTCCCTGGCCTCCAGTCCTCTTCTGTATGGGCAATGCAGAACCTGAACATGCCGTAGTCTGTCGCATACCTGAAGGACAACTGTTCTGTTACTAAAATGTTCAGACAATTTCTGCAGCCATACTGAGCCACTTTACCAGAATTTCGCACGGTTCTCGGCAGGAGTGTAGAATACAGTTTGAGCAGGAACACCACATTCTCCTCCGGAATCAAGGTTTCCGTAGAAAGAACCAGTTCCAGGCCAATCCCTCTCATGATTACCACTGCCAATCATGTATGGCACAGTCGAAGCAATCGGTTCGATCTGTGCAGTGAACTGATCCCACTGCGACAAGTAACCATTTGCGTAGCAAATATCCCCAATGTGGACAACCATGTCAATGTTTTCCAGGTCTCTGATGATCTGGTAAGTAGTGTTCAGTGAACCTGGCTGGAAGTCATTGAACTCATTTGAACCATCTGCCTCTGCCTTTCCCATGTCTCCGAATATGACTACTCGCTGCAAAGAATCTTGTCCAGGATAAGGTGATGCTTTGAAGCTGTATGACTTGCTCCAGATAAGTGTACTGTTTGGTAGCCTATGACCTAGTCTGTAGGTATACAGTGAATCTGGCCACAGATCTTTTAAGTAACTTGTATGAATGTAACCAGGATGGCGCCATCCAACAGTTCGTGCCGGTGCACCACACATGCTATTCCTGTCGAATGTCAATGTTCCAGCTGGAGAAAGAAAACTACGGCCTCCTTTCGCACCCCATTCGACAAAAGGAACAGCTTCTTTAATATCGTATCCACTTGTCCAGGTGACTGTCATTTCATTCCAAGACTTCCCTTGTGCCAAACGTGGGTAAACAGGCGCCTTTGGATTTGCAAATGCGACCTTGTTTGAGACTGCAATTAGCTTCGGCTTCAATAGGCCACCTGAAAAGAGTGCAAATGAGAAATCTTCCCTCTGGTTGATCAACTGAAGCTTCAGGTAGCCCTTCCCAGACTTATTATAGCCATCATTATTGAAGTTTGCAAATTGGTACTTGATAGGTGCCGTGCATAGCACCGGGGGACGCTGCCTCTTGTTTTCAGGCTCACAGATTGCAGCACTAAAATTAGCTGGAGAAAACACTCCAATCCAGTCGTCATTGGAGGGGCTTGGATGGAAGAACTCTACCTCTACCCATTCACTGTTCTGACCCTTCAGTCCAAGAACCCAAGGCGATGCCTTGACATGCGCCGATTCGTTGACGGCAAGGACCGTCCTCTCGACAGCGATCCTCGACAGCGGCTGCTCACCGGGGTGCGCCGCCGCGCAGACAATCAGCCATGTGGCCACCACCCAAAGCCTGATCATACTCCTCCTTCAGTGTCCAAGAAAAGGCAGCAGCTTTAATATCCCCTTGAAGGAAACAGGTGCAGATGTGATCATCATAAATAAATATCTCAATCCAATCATTGAGGTAGGAAT

Explanation	CPC Score
noncoding	-1.12056

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0136000.1	12	23805461	A	G
Osa12LNT0136000.1	12	23806322	A	G
Osa12LNT0136000.1	12	23806388	T	C
Osa12LNT0136000.1	12	23807056	A	T
Osa12LNT0136000.1	12	23808460	G	A
Osa12LNT0136000.1	12	23806953	C	T
Osa12LNT0136000.1	12	23806836	T	C
Osa12LNT0136000.1	12	23808377	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0136000.1	osa-miR319a-3p.2-3p	Cleavage	5.0	19.297	1	20
Osa12LNT0136000.1	osa-miR319b	Cleavage	5.0	19.297	1	20
Osa12LNT0136000.1	osa-miR164c	Cleavage	4.0	21.759	1	21
Osa12LNT0136000.1	osa-miR167e-3p	Cleavage	5.0	18.601	1	21
Osa12LNT0136000.1	osa-miR167i-3p	Cleavage	5.0	18.601	1	21
Osa12LNT0136000.1	osa-miR530-3p	Cleavage	4.5	12.56	1	21
Osa12LNT0136000.1	osa-miR2097-5p	Translation	3.5	9.169	1	22
Osa12LNT0136000.1	osa-miR2871a-3p	Cleavage	4.5	17.884	1	21
Osa12LNT0136000.1	osa-miR5338	Cleavage	2.5	16.58	1	21
Osa12LNT0136000.1	osa-miR5338	Translation	4.5	22.823	1	21
Osa12LNT0136000.1	osa-miR2871b	Cleavage	4.5	17.884	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0136000.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0136000.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0136000.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0136000.1	12	nan	Morphological trait	Seed	RG543	RG81

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus