\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0136300.1

GACAGGACAACTAAGCAAATCCAAACGGTAGATAAAGCCAAACAAAGTCATCAATCTATCATTTTTGTGGTTTGTAGTCTGTACTGTACATGATGCACCTCTATGTAAGTAATACAGAGAAAAGGAAACTCAAGCAAAACTCGCACTTTAAACGGATGCCGCATGCAAGACCCAGTAATTGGCCAGTTAGCTTCATAGTCACCATATCATGTGAAACTTGTTAGTGTTTCAGACAGTTAAGAGGAGACTCCTTAGCTTGTCAAGCTCATGTTGCTGACAAAATTGGGCGAACTGCATCGGTGAAATCTTCATGGAACCTATGCTCAGAAAATCTTTGAGCGCGTTTTCGTGCTGCTGTTGCCATCTCATGCCTCTCTGCCTCCGGCATCCGCAAGACCTTGACAATTGCCTCGGCATATTCTTCCTTCTCGGAGGCTAGAAATCCTGTCTGTTGGCCATCCTCATCTAGCACAATGTCCATCATTGGTCCTGCCGATTTATGGGCAATTGGAATAGCACCAGCAGCCATGTATTCAACAACACTTATCCCAAAATGCTCATCTGTCATTGAATGGAGCCCAGCAACAGCACCACCTAGAAGCTGTACCAAGTCCCTGTAAGAGATATCCTTGTGGAACTCCACAAGCTCATCTATGTGTAGTTCAGTGGATCTGTCTTTAAGCTTTTGCAATCTTTCCAGATCCTCTTTATTCCGACAGCTTCCAACAAATTGAAGCTTTGGCTTAGGAAATTCTGGACTTAGCTTTTTAAGAGCAATTGCAAATGCCTCAAGCTGAAGTCCATGGGCCTTTTCTGGCCGAAACTGTGCAACTGATATAAGAATAGGAGGTGTAGTTGATCTTTCCAGTGGAAGCATCTGCAGGGCAGAAGTATCACATGGAGGGTATACCCTCCTAGTACGCTCTGGTATCCTCCAAATATTTTCAATATGGGATCTTGTCCACGATGAATTTACCATCACAAGATGTGCGCATGAACCGACCAGACCATATAACCAACTGAATATGCTATAGTAGAGGATTTTGCATCGGGACAACCATATGCTTCCAGCAATACGAGAGTCGTTATTGTACATAGAACTGCGTTGCTTAACACGTTCAACCATGTCAGAACTGATTGTCGGATAATGAGTGTAGCAGATGACCTTACAGCCAAATAGCCGAGCCAGTGGATATGTAAAAGCATAGCCGCTCGTATCAAAATAGAACTGCGGGGTGAATTTGTTAAGAGCTTCCCATGCAAGATAAACTGAGCCAAGACTTTGCCCAATCATCGTGAAGTGGGGATACGTGCTTGCTTCAATCCACTTTCTCCTATTCAAGTGAACAACCTGCGGCGGGCGGAGGAGGCGGACCCCGAAGCGGTCGAGCGCGCGGGCGGCGAGGCCGTCGGGGGAGGCGTCGGCGTCGCCGGTGAAGACGGCGCAGGGGAGGCCCGGGCGGAGC

Coding Potentia
Explanation CPC Score
noncoding -1.10582
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0136300.1 12 24204818 C T
Osa12LNT0136300.1 12 24207356 G C
Osa12LNT0136300.1 12 24206097 T C
Osa12LNT0136300.1 12 24205093 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0136300.1 osa-miR5791 Translation 4.5 14.83 1 21
Osa12LNT0136300.1 osa-miR159d Cleavage 4.0 15.946 1 21
Osa12LNT0136300.1 osa-miR172d-5p Translation 5.0 21.034 1 20
Osa12LNT0136300.1 osa-miR444a-5p Cleavage 4.5 23.386 1 21
Osa12LNT0136300.1 osa-miR5338 Cleavage 3.5 15.57 1 21
Osa12LNT0136300.1 osa-miR159c Cleavage 4.0 15.946 1 21
Osa12LNT0136300.1 osa-miR159e Cleavage 4.0 15.946 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0136300.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0136300.1 12 nan Resistance or Tolerance Submergency tolerance R1709 RM235
Osa12LNT0136300.1 12 qSD12 Physiological trait Germination/dormancy RM3331 RM235
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus