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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0136700.1

CGCACCGTCCTCGCGGCCGTCCGCCGCCCGGGGCCCTCGCCCTCCGCCGCCGCGCGCGCCCTCCGCGCCCCTCCTCCCGTCGCTGCCCCTCGCCCCCGCCGCGTCCCATCCCCCTTCGCCTCCTCCTCCCCGACGGCCGCACGGCCGCTGGCGGCGATGATGGGGTCGCCGCTGACGACGGCGGCGTTGCTGGCGCGGCTGACGGCGCACCCGGCGGCCAGCGCGCGGGCCTGCTGCGAGCTCTCCCAGGGTACTTGAAGTTACCATGTAGATTCACTGTCCTTTGAAAAGGATACAACTCTTCTTGGATGCGTCTTTTGGAAGGCTGTTCTGGTGTTTCGATTAACTTCAAAGTTAGAAGAAACTCTCCAGTGATAGCTCGTCTCAAAGTTTCTAGCTTAGACAGAGAAATAATTTCCTGTTATTACAACATGGCTTGCGCCTATGAATTCAGCTTCTTTCATTGTTTTCCACTTACTACCACCTGTTGAGATATCTCGCATTTCAATTGACCTGAGTATTGTGATATCACCGTCTTTGTTTG

Coding Potentia
Explanation CPC Score
noncoding -1.01654
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0136700.1 12 24815846 T C
Osa12LNT0136700.1 12 24816422 T C
Osa12LNT0136700.1 12 24817206 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0136700.1 osa-miR1878 Translation 5.0 21.463 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0136700.1 12 qSD12 Physiological trait Germination/dormancy RM3331 RM235
Osa12LNT0136700.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0136700.1 12 qLEI 4 Resistance or Tolerance Submergency tolerance RM5479 C901
Osa12LNT0136700.1 12 nan Resistance or Tolerance Submergency tolerance R1709 RM235
Osa12LNT0136700.1 12 nan Resistance or Tolerance Submergency tolerance RM5479 RM6953
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus