>Osa01LNT0010500.1

GCCGTTCCTGCTCGCCCCGTAGCCGTGCATCGCCCCGAGAGAGAGAGATTGAAGAGAACCGTATGACAGGTGGGTCCCACAATTTTATATATATATATAGAATGCTGACTGAATTGCCACGTGTACGCCACGTAGACCAAAACCACCGCGGATTAGATCGAGGGGGGTAATTCGTCCGGTTTGTATAGTTGGGGGTGAAGAATGTCCAGTTTTGTGGTTCAAGGGGTAATTCGGACGACCGCGATAGTTCAGGGGGTAATTCGTACTTTTTCCTTATTATTATTATTATTATGTTTCCTCCGTCCTAAAAAAAATTAACGGATTTAACCCAATCCCCTTCCAGTATAATCAATATGAACTACAATAAATCTAGTTTTTTTTTTACGGATGGAGTACTTATTAGTCAAAATTTGAATTTTGAACCTTAAATATGAATTTAAGCTGATTTTAGGATTTTTTTTTACCGAAGTTTATTTTTCAGCCTTTGATTTTAGATTGATAAGAACATGTATATAAAAGTTTTGTTTAGAAATTTTCTTTTCATTTGCAAATATGCCGTTTGGCTTACTCAACGATGGGAGCCTACCTTTCTCCTCTTTTTTTTTTTTTAGTTTTGGCTGTTCTTCTCTCATCATCAATTCTATAGTTTAGGAAAAAGTACGAATTAGCCCCCCGAACTTTTGCGGTCGTCCGAATTACCCTCCGAACTACAAAACCGGGCATTTTTTACCCCCAACTATGTAAACCGGACAAATTACCCCCCTCGACCCAATCCGCGGTGGTTTTGATCCACGTGGCGTACGCGTGGCAGTCCAGTCAGCACTCTATTTATAAAAAAAAATTGTGGGACCCACCTGTCATCTCCTCATCCTCTC

Explanation	CPC Score
noncoding (weak)	-0.259706

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0010500.1	1	7873094	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa01LNT0010500.1	DTM_#DNAt_MULE_japo_Os0166	Chr1	+	7873440	7874575	224

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0010500.1	osa-miR319a-3p.2-3p	Translation	4.5	13.709	1	20
Osa01LNT0010500.1	osa-miR319b	Translation	4.5	13.709	1	20
Osa01LNT0010500.1	osa-miR2878-5p	Cleavage	4.0	14.565	1	24
Osa01LNT0010500.1	osa-miR2878-3p	Cleavage	4.5	18.713	1	24
Osa01LNT0010500.1	osa-miR1439	Cleavage	4.5	9.796	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0010500.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0010500.1	1	nan	Morphological trait	Root	RM7383	RM243
Osa01LNT0010500.1	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0010500.1	1	Rf	Physiological trait	Sterility	nan	nan
Osa01LNT0010500.1	1	ppp1.1	Morphological trait	Panicle/flower	RG140	RM243
Osa01LNT0010500.1	1	prg1.2	Physiological trait	Source activity	RG140	RM243
Osa01LNT0010500.1	1	spp1.2	Morphological trait	Panicle/flower	RG140	RM243
Osa01LNT0010500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0010500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0010500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0010500.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0010500.1	1	An9	Morphological trait	Panicle/flower	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus