© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0136900.1
GGTTTAGGATTTGGAAGCAATTTTCAGTCTAGTACCACATCAGTTTAACATTAATCCAGGATACAACCAAGCTGCAGTCCACTAAAAACTGAAGCCAATTTAATCCCTTCCAAGGGAAGAGCAGCTAAAACTGACATTATGTATCCTCTCTTTGACCAACCTAAACACCAGTTTTCTCTGCGCCTACCAAATTACAGCAACTTTAAATTTACCTGTATATCAAGAACGAAAAAAAAAACTAACAAATTCTGCCAGAATGGAGCAGCATTCAACAGCATCAATGGAGGGAAGGGGAGCTTTGAGTATGGCACAGCCGCTTTCTTTTGAGTATATGTCATCAGGGGAGAAGAGAATCCTCCTCCCATATATGGTGATATGTTTTCCCGGGTGGCGGAACTTCACGACCTTGTGCCAAATCCGGTGATCGTCGACAGGTGGGACATCTGAAGATGGTTCGTTTCAAGACTATGCGGCCTTTGGCCGCCCGTAGGATATCACCATCACATAGTCTCCCCCGGAGGAGCCGACCACAGTCTGCAAGGTGCGAGCTGGGCCGAACCTCAGCCACCGCTCTATTAAATTGCGCAGGGGTTGAATTGGGTTCACTGGCTGACCGCAGCAGCTTATTTCAACCTCAGTCTCACTTGGAAGACTGAGCTTCTGCATGATATACTTTTGGATGGATGACGCGGGCATATTGTCATCTTTTATTCTCAAATAATGGGTTGGTATCTGCGGCAAGGGTGGAGCACCTTTCTGGTCAAATGATGCAATCAATGAAAACCATACAGGGGTTAATAATTTTTCATGCTTGCTAGCTGAATGACTAGACACTGCAGCGGCTGGGGGTTGTGCAGGTTTCCTCCCCCGGCCAGGTCCTTTCCTTTTAAACGGAACTGTTGCCACAGGAACTTCTTTCTTCTCATCTTGAACTTTGGACTTAAGCAGATACTCCCTAGCCTTAGTTCTGCTAGCATTTGCACTACTAGGAGATTCAGTGGGCTGATTTCCCCTAGCAGCTGAACTTGATCTATAGGACTTTGTTTTGCTTGCAGCCTCTACAAGACAATTTAAAGGTCTCCAGAGCTCTGACTTGTCCAAGTCCTTATCGTCACCTCCTTTATCTTTACTGGAGGGATGACTCGATGTTTCCGCATTTGACAATACCTGTCTTCTTGTTTGAGGTACTTTGCTCAAGCTGTCCAGCAAGCTTGAATTATCAGCATTCTTATTGGTGTTATCACTATCCTTTTTCACAGGAGGAATGATAGGACCAAGGTCACGTAATGCGGCAGCAGACTTCCTGGTAGATGCCCTTGTTCGGCGCCCTGTCAAACTCTTTGGTGTTATTTCAGGTGTATTGACCACCAATGAAGAGATAGATCTCTCTTTCCTTTTAGCAGGCGGCGCAATAGGAGATTCAACCTCTTCAGCATTAACCTTCTTTCTTTTCAATGGAAATATTTTTGACCTCACATCTTGTATATTGTGATCAGCTCTAAGCTTCTCGAGGGGAGCACAGCCAAGATCAATTTTACAGACTGGACAGTGCTCTAGCTCTTCATCATTAATCTTCTTATAGATACACTTTCTACAAAAGGTGTGGAGGCACTCGGAGACGGTGGTGGCGTCGCGGAGGATGCGGCGGCAGAGCGGGCACGTCATGCAGCGGGCGAGGAGCTCCCGCTTCACCATCACCACCTCGCTCGCCGCCGCCGCCGCCTCCCGCTTCCTCCGCCTCCGCCTCCGCCGCTCCCGCTCCCGCTCCCGCCGCGGCTGCTCTCCCCCATCCTCCTCCCCCTCCTCCTCGTCGTCCTCCTCCTCCACCACCTCCTCCTCCTCCTTCGCCGCCTCCGGCGATGCGGGCCCGGTCTGCATGGCGTGGGGCCCCCCTCCGAGGCAAGAGAGACAGAGAGAGAGAGAGGCTCCTAGCTCCTCCTCCGCATGCCGCGGGACGCCGCCTCGCTCCCCCTCCGCCGCCTCCGGAGCGTGGAAATGGGAGGAGAGATCGAAGCGGAGGAGGAGGAGGCCGACGACGACGACGACGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0136900.1 | 12 | 25249670 | T | A |
| Osa12LNT0136900.1 | 12 | 25252401 | A | C |
| Osa12LNT0136900.1 | 12 | 25252431 | A | G |
| Osa12LNT0136900.1 | 12 | 25252579 | A | C |
| Osa12LNT0136900.1 | 12 | 25249501 | A | G |
| Osa12LNT0136900.1 | 12 | 25249970 | C | T |
| Osa12LNT0136900.1 | 12 | 25249988 | G | T |
| Osa12LNT0136900.1 | 12 | 25250317 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0136900.1 | osa-miR156b-3p | Cleavage | 4.5 | 19.61 | 1 | 21 |
| Osa12LNT0136900.1 | osa-miR319a-3p.2-3p | Cleavage | 4.0 | 17.547 | 1 | 20 |
| Osa12LNT0136900.1 | osa-miR319a-3p.2-3p | Cleavage | 4.0 | 11.443 | 1 | 20 |
| Osa12LNT0136900.1 | osa-miR319b | Cleavage | 4.0 | 17.547 | 1 | 20 |
| Osa12LNT0136900.1 | osa-miR319b | Cleavage | 4.0 | 11.443 | 1 | 20 |
| Osa12LNT0136900.1 | osa-miR444a-3p.1 | Cleavage | 5.0 | 18.61 | 1 | 21 |
| Osa12LNT0136900.1 | osa-miR444d.1 | Cleavage | 5.0 | 18.61 | 1 | 21 |
| Osa12LNT0136900.1 | osa-miR1860-3p | Cleavage | 4.5 | 19.956 | 1 | 22 |
| Osa12LNT0136900.1 | osa-miR2907a | Cleavage | 5.0 | 19.544 | 1 | 22 |
| Osa12LNT0136900.1 | osa-miR2907b | Cleavage | 5.0 | 19.544 | 1 | 22 |
| Osa12LNT0136900.1 | osa-miR2907c | Cleavage | 5.0 | 19.544 | 1 | 22 |
| Osa12LNT0136900.1 | osa-miR2907d | Cleavage | 5.0 | 19.544 | 1 | 22 |
| Osa12LNT0136900.1 | osa-miR5501 | Cleavage | 4.5 | 16.692 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0136900.1 | 12 | qLEI 4 | Resistance or Tolerance | Submergency tolerance | RM5479 | C901 |
| Osa12LNT0136900.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | R1709 | RM235 |
| Osa12LNT0136900.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | RM5479 | RM6953 |
| Osa12LNT0136900.1 | 12 | qSD12 | Physiological trait | Germination/dormancy | RM3331 | RM235 |
| Osa12LNT0136900.1 | 12 | qLEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0136900.1 | 12 | qNEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0136900.1 | 12 | qTIL12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)