© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0137000.1
GAAACTAGGATTAGTCCACGAGATTATTTACCCTACACCCCCACGACATTAAAATGATTACGAGTTTTTCACTTTTGATTAATTAAAACTGGGTAAAATGAAATTAAAACGAAGTAGTAAATAAAAATTAAACGCTTCTTGCTTTGTCCATCCATCCATGGAGATTCTTGATTAGAGTTAGTCGTCGATGGCCTTGGCTCTCATGCAGCACGACGGCCCGCGCCGCTGCCGGCGGCTGTCGCGCCGGCGCCCGTAGAGGTACTCCACCAGCTGCACCCTCGACGATCGCCGCTGCACGGCGGCGGACGACTTGCCGCTGCTCGCCGCCGCCGTCGCCGCGGCGGCGGCGGCGCGGCGGGTGGCGCGCTCCTCCTCGTGGCGGAGCAGCGCGTGCTGGAAGCGCTGCGTCTCCTGCTCGAGCCGCGCGATCTTCTCCGACATCTTGCGGACACGCTCGAGGATCTTGCGCTGGCTGCGGCTGCGGAGGTCGTCGCCGGCGGCGCCGCCGGCGGCGTCGGCGGAGGTGAACTCCTCGGCCTTGCGGAGGAGCTTCCCGTTGGTGTCGATGAGCTGCGCCACGGCGGACTCGGCGTCGACCATCTGTGCGGTGACGTCGTCGAGCTCGGGCGCCGCCTCCGCGCTCGCCCGGAGCTCGCCAACGATCGACTGCAGGTCGACCAGCCGCTGCGCGTCGGCCGTCAGCCGCTCGATCACCTTCTTCTTCCACTCCCTGTGTGGCGCCTCCGCCATGGCGGGTGGTGGCGGCCGCGGCGGGAGGAGGAGCTCCTGCTTGTCCACGCTAAGATCCTTTACCACCGTGAGCTGGCTCACCTCCGACGAGCACGACCTCCGACCCCTCTCCGCCGACGCCTCGCTCTGCGGCGGCCGGAGATCGTCGTCATCGCCATCGCCACCCTCCTCCTGCTGCCGCCGCCTGCTCGCTCTGACCACGCTCCACAGCCCAAGCGGCGGCGCCTCCGTCGAGCCGCCGTTCCTCCTCCGGTGGTGACGCTGCGATGACGCCGCGGCGGTGGCGGTGGCGGTGGCAGCTCGGCTCCGGTTGGTCGGAGTTGTGGTCTGGACGAGGTCGAGCTGGATGTCCTTGAGCAAGCGGCGGTCGTAGGCCGCGGCGGCTGGGTCGCTGGCGGCGTCGCTGTCGTCGACGGCGGCGGCCATGTCGTCGCGGAGGCGGAGGAGGTCGATCTGGCGGCGGGCGTCGAGGAGGTTGGCGTTGAAGTCGAGGCGCTCCTGCTCGAGGACGACGCCGGTGTCGGTGACCACCTTCTGGAGCGCCTTGATCGTCCCGTGCAGCTTCTCCAGCTCCATGTCCTTCACCATCTTCGTCGCGTTCGGCTCACCATGGATGGGCTTCACCGCGATCTTGGACAGCTGCGGTGACACCGAGAATTCCTCCATCCTGAGCTTATTTGATGGTAAGCAATCTTTGGCCAGTGACATGGTTTGCTTCTCCAGGGCACTGACTTCAGTTTGCAATGCTCCCAACAGTGTGAAGTCACCATTGAGATCAACCTTCAGCCTACTGTTCTCGATCTCGACGGCGTTGAGCTTGTCCTTGAGCGCATTCACGTAGGAGTTCCTCCGGGTGATCTCCTCCTTCAGGACCTCCTTCTGCACCATCTCGCTTATCTCGAAGCTCTCGCACGACGCGATGAGCTCAAGCACCTTCTCCTTGAAGAGAGCCGCGTTGGCAGTGGCCATCTGCATGTTGGTAAGCAGTTTTGTGATCTCGGCATCGCAGGACTTGACATCGATCACCGGCTGTTCTTTGCTTCTGAGTGCCTGCACCTCGCTCTGCAGCTTGTGGAGCTTCTCCCTCAACAACTCATTCGATTTCTCAAGGCCAGCGTGGTCGATCTCTTTGCGCTGTTCGATGTTCACCGTGCTCTCTTGCTGGCTCTTCCTGCCAGATTTCAATAGCTTTGTGTCTCTTCGCATAGTACGCCTTCTCCCAGCGCCGATTTCTGAACCAGAGCTGTCACAGATGCTCATGGTTTTACTGAGTTCCTTCTCGAGATAGTTGTTCTCGAGTTGCAGGTCTCCAAGCTTCTTGTTCATCAGCTTGATCTCCTGGTAAAGCTCATTGCCTGCTGCATGGAGAGACCCGAAATCTTCATGCAAAGACTGCAGCTGAGATGTCCTCTCATCATGAAGACTTTTGAAAACGACACCGAGGATGTCTGTACTGATTGCTTCACCAAGGAGAGTATTGAAATCATCGTTGGCCGTCTTCTCTTTCTCCCTGGAGTCATAAAGTTTGCCTGACAGTGAGGAGTTCTCTTCAATCAGCTTGATGACTTCAGCTTGCAATGACTGCCGCGACTCTTGCAGCTCTGAGAGTTGTCGAACCAAGAATTTTGCCTCACCTTTCATCTCCTCAACCCTACGGTTACGAGCCTCCATCTCCTTCCGTAACTCGCAGCTGATCTTCATGAGGTCGTGCCTTTCATTTTGCAGCTGCAGAAGCTCTTCGCTCTTCGCCTGCCACTCTTGCCTCAGAACACTCCTCTCTGACCTTAGATCAGCCACCTCGCGTCCAAAGTGCTCCAAAAGCGTGACGACAAGAGACTTCTCGAGGATCTGGTTTTGCTTCACGTCCTGAGCATCAGAAATAGTATTCAGCAAGCACTTGATCTCATGCAAGATGAGCTGCACGATTACATCAAGCTTCATTAGATCCAATGATCCATATTTATCATCCAAATGTAGTTCTTCCATCACAGAACCAATTCCTTCCGTTAACCTCTGGTTGTTTTCTGTCAAAAAGGTTAATTTCTCCTCCTGGATTTCGCATAGCTCTTTCTGCTTCTGCAGTTGCCCTGAGACATCAGAATTTGCCTCTGCCATGTCACCTAAGCACTTCTGCAAGACGAAAATCTCCATCTGAGCTTCAACAATCTTATGCTCCTCATCTTGAAGCTGGTTCTCCCTACGACGGCCTTCTTCGAGCAGGAAGCTTAACTGCTTCTGTACAGCACTGAACTGAGTCTTGCCTGAGTAGTTCAGTTCTTTGTGCGCCTCTCTCTCAAGCCTTAACATCTCCTGTAGCATGATCACTTCACTGCTTGCCTTGTTTTTCTCCTGCTGAAGATCCAGGTGGTGTCCTTCTAACTCCGTGAACTGGGCCTCCAGATTGAGTAGGGCACCATTCATGCTATCCACCTCACGCACAAGGGTTCTCTTTTCAGATCGAAGTACAGAATTCTGATTAAGTAGTGCATGTGTGGACTCTTCCGAGTCATTCAGCTTCCTTCTGAGGATCTCAAGCTCGGTATTGTTTTCAGATAACAAATTTTCCAGGAATACGTTTTTCTCTGATAGCTTCTCCATTGTATGAGAAATGCCCTCGATCCGTGCAATGAACATGGACCGCTCAGATTGGAAGCCATTAATCTTGGAATTGAGGTGCTTGCATGATTCTTCCAATGCAACCTTCTTCTCTCGCAATTCTTCAACCTCAGTGGTTGCAGCTGACAAAGACCTCTCTAAGTGAGCATTTCTCTCCAACGTCCTCTCGAGCTGCATCAGATTATCAACATACAGGGCTTTCACACCCTCGTGATGCTTGATGGTCTCTTTAAGCTCAACATTCCCATCTCTTACCTCTTGCGCAAGTGCTTGGAGGGATTCCACATTGAAATTCACCACCTGTATTTGTTCCTTGATCGAAAAATGTTTCCTCTCGGAGTCACCCTTGTCATCCTTGAGCTGGGAAAGCTCATACTGAAGCACCTTCTTTTCCTCCACATGCCGAGACACCTCTTCCTCAAGTAGCCGCTGGGCATTCTTCAAGGAAATTACTTCATCCTGTAGACGAATTATTGCTGAGATCGAAGAGTTGTTTTGCTCCTCCAGCTTACGGTTCTCTTCGCGAATCTTGTCCAGATCATTTTGAAGTCTAACTTTGCTTGCTTCAATGTCATTAAACTTACTTGCTTCACCATTCTTTTCAAGAGTCAAGATTCTTAGCTTCTCCTTGGCTTGTGCCAGTTGCTTCTCCAGTGATAGCCGTGTCATTTCGGCTTGCATGCTCTTGAGTTGCTCTTCTTGTATAGATATGCTAAGCTTTTCCAACTCAACGTGCTTCTCATTGAGTTCTCCATGCCTCTCTTTTGAGTCATTCTTCAGCTTATCTAGCTCCGAATACAAATTCTGGTTAGCTCTTTCAAGAAGAAGGCAGCGTTCCTCTGCGGTGCTCAAATTCTCCAGTCCATTTTGCATCTCCTCCTTCAATCTCTTGAACTCCTCCTGGGTTTGCAGTATTTCAGACTTGAGGGCCTGTAATCGATCACTGGATTGTTGGCATTGTGAAAAGGCAGCTTCCTTCTCGGCTTCTTGTTGTGCAAGGGCCTCCTTGAGGGAAGCAACTTCAGATTCGGCCCTGTCGCTATTTTCTAACACTGAAGAGATCTTCTTCTTGAGTTCTTGGTTTTCCTGCGACAAGCTCGATATTTCTTTCTGCAGCTTCTCATGTTCCTGGTCATCTTTGGCACGCTTTTTTGAATCACCAGAATTTATGAAAGAGAGGAAAAATGGTGTCATGTCACGACTATCAGCCTCAGTTTCTGTAGACAAGGTTTCAGCTGGCAAATCATCATCCAAGTCTAACTGAAACTCATCAGGAAATGCTTCCGCCATTTTCCGCTGGGCGCTTCGGAGCTCCCCAGCAGCATGATCATGTCTTTCAGCTAAAGCTCGGTAAGCACGGTATAACTCCTCCAGCAAAGACATCAACTCTGGACGCCTTCTGTAGTACATTTCTGCTCTTCTTGCAAACGAGTCAGCATCCTCATCGATTATCTTGATCATACGCTTGATTTTGCTATCCATATCTGTGAGATTTTCTTGAAGCCATTTCGAGTTCTTTGGGCTTATATGACTATCCCACCACCACGAGTACTTGCGCATCGGATTCGTTGGCGACATCATCTCCATCAGATCCAATCAAGACAAGAGAACAGCACCCCTTTGATTCTGAACACTTTTATGGCTTCAAAGCCAATGGTGACCAAAGCAACGGGATATCAACCTACATGAAAATCTAATTCCGGCAAACTACCTTCACAGGAGAAGAAGAGGAGTGAGGAGGAGGCAGGATGACATCTGGGGTTGGATCTTTCCTCCCTGAAGTGCAGCTCCAAACCCAAGAAAGAGAGATCCAGCTATTACCACCCCTCATCCCAAAACAACCCCTATGCCATCATCATTCACAACAACACATTAAACACTATCCAAGAAAAAAAATTCTCAATTTCTTCTCTCCTTTTCTTTTTGCAACACAACACCCCAAGAGAGTGTGAGAGTGAGAGTGAGCTCTCTCCTGTGGCAGAGC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0137000.1 | 12 | 25544824 | A | T |
| Osa12LNT0137000.1 | 12 | 25536822 | A | G |
| Osa12LNT0137000.1 | 12 | 25537255 | A | G |
| Osa12LNT0137000.1 | 12 | 25537962 | A | G |
| Osa12LNT0137000.1 | 12 | 25538372 | A | T |
| Osa12LNT0137000.1 | 12 | 25539436 | G | C |
| Osa12LNT0137000.1 | 12 | 25539892 | T | C |
| Osa12LNT0137000.1 | 12 | 25540043 | A | G |
| Osa12LNT0137000.1 | 12 | 25542223 | A | G |
| Osa12LNT0137000.1 | 12 | 25542445 | G | A |
| Osa12LNT0137000.1 | 12 | 25539169 | C | T |
| Osa12LNT0137000.1 | 12 | 25538778 | A | G |
| Osa12LNT0137000.1 | 12 | 25543065 | T | C |
| Osa12LNT0137000.1 | 12 | 25543347 | C | T |
| Osa12LNT0137000.1 | 12 | 25543474 | A | G |
| Osa12LNT0137000.1 | 12 | 25544019 | T | A |
| Osa12LNT0137000.1 | 12 | 25544144 | A | T |
| Osa12LNT0137000.1 | 12 | 25544461 | G | A |
| Osa12LNT0137000.1 | 12 | 25540565 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0137000.1 | osa-miR5540 | Translation | 5.0 | 22.288 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5540 | Cleavage | 4.5 | 16.787 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5792 | Translation | 5.0 | 15.804 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5792 | Translation | 3.5 | 15.975 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR1437b-3p | Cleavage | 3.5 | 22.421 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR164a | Translation | 5.0 | 18.588 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164a | Cleavage | 4.0 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164a | Cleavage | 5.0 | 16.198 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164b | Translation | 5.0 | 18.588 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164b | Cleavage | 4.0 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164b | Cleavage | 5.0 | 16.198 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159a.1 | Translation | 5.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159b | Translation | 5.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159c | Translation | 4.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159d | Translation | 4.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159e | Translation | 4.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR159f | Translation | 5.0 | 14.28 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR319a-3p | Translation | 5.0 | 20.998 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR160f-3p | Cleavage | 3.0 | 15.362 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164c | Cleavage | 4.5 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164d | Translation | 5.0 | 18.588 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164d | Cleavage | 4.0 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164d | Cleavage | 5.0 | 16.198 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164e | Cleavage | 4.0 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164e | Translation | 5.0 | 18.588 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164e | Cleavage | 5.0 | 16.198 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR166k-5p | Translation | 5.0 | 18.939 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR169e | Cleavage | 4.5 | 19.732 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR169f.1 | Cleavage | 4.5 | 19.732 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR169g | Cleavage | 4.5 | 19.732 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164f | Translation | 5.0 | 18.588 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164f | Cleavage | 4.0 | 18.274 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR164f | Cleavage | 5.0 | 16.198 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR437 | Cleavage | 5.0 | 14.796 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR437 | Translation | 4.5 | 15.194 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR815a | Translation | 4.0 | 8.397 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR815b | Translation | 4.0 | 8.397 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR815c | Translation | 4.0 | 8.397 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR1861b | Cleavage | 4.5 | 21.616 | 1 | 22 |
| Osa12LNT0137000.1 | osa-miR1861f | Cleavage | 4.5 | 21.616 | 1 | 22 |
| Osa12LNT0137000.1 | osa-miR1861i | Cleavage | 4.5 | 21.616 | 1 | 22 |
| Osa12LNT0137000.1 | osa-miR1861l | Cleavage | 4.5 | 21.616 | 1 | 22 |
| Osa12LNT0137000.1 | osa-miR1866-5p | Cleavage | 4.5 | 10.99 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR1876 | Translation | 5.0 | 10.919 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR1878 | Translation | 4.5 | 18.149 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR2055 | Translation | 4.0 | 13.344 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR2090 | Translation | 4.0 | 18.098 | 1 | 22 |
| Osa12LNT0137000.1 | osa-miR2092-5p | Cleavage | 4.0 | 16.063 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR3979-3p | Translation | 3.5 | 20.2 | 1 | 20 |
| Osa12LNT0137000.1 | osa-miR812n-5p | Cleavage | 5.0 | 22.752 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5074 | Cleavage | 3.5 | 20.176 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5074 | Translation | 5.0 | 22.806 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR2863c | Translation | 5.0 | 22.841 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5148a | Cleavage | 4.5 | 11.681 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5148b | Cleavage | 4.5 | 11.681 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5148c | Cleavage | 4.5 | 11.681 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5156 | Translation | 5.0 | 20.532 | 1 | 24 |
| Osa12LNT0137000.1 | osa-miR5488 | Translation | 5.0 | 13.451 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5490 | Cleavage | 4.0 | 7.51 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5490 | Cleavage | 4.0 | 7.812 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5504 | Cleavage | 5.0 | 7.573 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR1860-5p | Cleavage | 3.5 | 15.637 | 1 | 21 |
| Osa12LNT0137000.1 | osa-miR5508 | Cleavage | 4.5 | 13.93 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0137000.1 | 12 | qLEI 4 | Resistance or Tolerance | Submergency tolerance | RM5479 | C901 |
| Osa12LNT0137000.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | R1709 | RM235 |
| Osa12LNT0137000.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | RM5479 | RM6953 |
| Osa12LNT0137000.1 | 12 | qSD12 | Physiological trait | Germination/dormancy | RM3331 | RM235 |
| Osa12LNT0137000.1 | 12 | qLEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137000.1 | 12 | qNEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137000.1 | 12 | qTIL12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)