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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0010700.1

GGCCCGCAGCGCGTCGAGCAGGCGCCGCCCGTAGATCCTCTCCTGCGCGCCGCTCCTCCACTTGGTCCTCGTCGCCGCCGCCGCCGCGGCGCCCGCACCCGCACCCGCCTTCCCCCGCACCTTCGCCATGCCCGCCACCCTCACCCCCGACGACGACGCAGAAGACGACGCCGCCGACGACGAGCCGCTGCCTGTAGAGATCATCACGCCCACCTCCACCTCCGATTACCACCAATCAGGCGGCGGCGGCGGTGGTGGTGGTGGGAAGAGGAGGAGAGGGAAAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAAGCTTTTCTTTTGTGGCGTAGTTGGGGTTGGGTGTACTTATTTGGTGCGGGGGGTGGTGGTGATTAGCGGAGTGGATTAGACATGGGGAGTGGTGTCGTGGTGAGGTGGTGGTGGTGGTGGTGGTGTTCGCCTCGCCTTTTGATCGTTCGGTTTGGTGTGGAATTTGGCGGTGAGGTGAGACGAGCGAGGTATGAGTCGCGCCTCGCGGTAGGCAGAGGGCAGGCGAGGCGCTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.525456
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0010700.1 osa-miR156c-3p Cleavage 3.0 10.656 1 22
Osa01LNT0010700.1 osa-miR156f-3p Cleavage 3.5 10.656 1 22
Osa01LNT0010700.1 osa-miR156g-3p Cleavage 3.0 10.656 1 22
Osa01LNT0010700.1 osa-miR156h-3p Cleavage 3.5 10.656 1 22
Osa01LNT0010700.1 osa-miR156l-3p Cleavage 3.5 10.656 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0010700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0010700.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0010700.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0010700.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0010700.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0010700.1 1 Rf Physiological trait Sterility nan nan
Osa01LNT0010700.1 1 ppp1.1 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0010700.1 1 prg1.2 Physiological trait Source activity RG140 RM243
Osa01LNT0010700.1 1 spp1.2 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0010700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0010700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0010700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus