© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0137200.1
GTTCGTTCTCCTTCCACCCACGCAGATGCGGCGCCGCCTGGTTCCCCTTCCCCTCCTCCCGCATTGCACGCAGCGACAGCCAGGGCGCGTGCAGCGGTGCTGCCGCTCAGCTCACTCCCTCCCTCCCCTCGCGTCGGTTCCCTTACCTGGGCAGCAGTACGCCAGGGAGGCAGAGAGCTCCCCGAGCAGGCGCCCCACTCCCATAGGCTGTGGCTCTTTCTCTCCCATCGCCCTTGGTTTGTTCGTCTCCTCGGGCTGTCGCAAAACGAATTCACCCTTCACCTCCCTGGTGAGTAATAGCCACCTATTTCACTGTAATAATCCGCCTTTTAATTCCTGTAACTGATGGTCAAGGTGAGAGGCCAAACTTTGGATTTCTTTTATGGTTGAGGGGAGTTTTTAAGAGGGATTGAGAGCTATTAATTGCTTTGTTTGGTTAGGAGATATGAAAATTTTGGTGGGTTGGGGATGGGGAATTGAGGAATGAACTCTATTCTTTTCAATACCTATGTAAGGGGTGGTAATTTGAAGATAATTCCTCCTTTACTTCGCCTAAACAAATCTCAGCCATCCGTTTTCATTAATGACCTAATGTCCAACTAAACTCCCTATCAATTTCCACCACCTCTACCAAACAAGAGACTGGGATGAAAAAACAAATTCCCATCTTAATCTCATCATCAATTCCCTCATGTAAACTCCCAATCTCATTCCCTCAAGTTGCCAAACAAGCCGTTAAGTCGTGCATGTGCCCTCAACCCTTCCCTCTCCTCTTTTGCAGCACCAACCATGTCCTTTGCAGGTTTGTAGCATATATATCATGTGATGGTTCAATTTTATGGTATGGCCGGCGTTGGTTGGAAATATTTTCAGATGCCCCTGTCATATGTTAAAAGGAATGGCTGAATGAGGATCATATAATAAGCATGGATCTTTCTATATCCTTCAACCCTGTTGTTGTCATCAAATGGTGGTTTTTTCATGTTAAGAACGAATTCAAGGTGGACTGGTGTTTTTTTATAATCCGTGAGAACTGGTAATTATCACCTCAAATTTGTTCACTTTTATGGTGGTTTCTTAATCGTATTGAAATAGTTAAATTTTAACTTATACCTGCACACTATCATCTTTGAATCACTTTGTCTCATGTGACCATGACCTTTGATTTTAGAAGGTCACCAACAGTCAATGGTGGGCTGATTGAGTTTGCAGTTTTATATGTATATGTATATATCACCAACAAAAAGTCATTACAATGAAATAGATGGATGGTTGGTTCAGTATTTTTTTTTTACAAAGAACTAATTGCTCAGATTTACTCGATTGTCAGATTTATTACTCAATACAATTAAAAAAAATCCTTTAGTTAATTGTCTTGCGCGCTGCACATACCACCAACATTGGCAATTCATATTGGTATTTCCTTTTTTATTCGCACCACAATAATTCGTGTAGTTGCTACTGTCTAATTTATACTCCGATACAGAGTTCTTTTTTATTTCTTTCAGTTCAGTCTTTAGGATCAATAATAAGTTCAGAACTTCATATTACTGACCTGGTCTTTTTCTTGGTATGTTCTTTCCTACAATGAAGTGTACACTACGGGATATTTTGATTTTTAGTTATGGACATAATTTTTATCTAATATTTTATTTTGTTTTCCTACTACTAGAATATGCAGGGGAAAGAGGAATCAATAATTAAAATATTGATATCGCAACATGCTTCTTGCTGGTGAATAAACACTTGAACAAATCTAGCAGCTAACTTAGGTGCGGTCAATCACATAATCTTTGTTATTGATCCTATAATTTCTTGCAAATATTCCTTATTTAAGAATCAAGCAAACTAATTGTGTTGTAAGCCTAAAGATTGTATTTAATTCCAGTCAAAAAAAAGATTGTATTTAATTATTTTTTTAATTCAGTATGCCTTACATGCTATACTGTGCACCACTAAAAAGTACGTCATAGTTTAGATTTTAGTAGTACGTGACGAGCAGAACTGTTGCACCTTTGCATTCGTTTTGCATAGCAACAAAACAAGCATGTGGTTCTGTTAGTCTATTGATTTTTTTTCTCTTGCCTATGTTTATTTGTTGCTCCCATGTCTCAAAATAGATGTCCTCTTATAGGAGTATTCAATCAAGTGATGCTCACACACCTAATATTTTTATTTTCTAATTCTCTGTAACTGTACAATTTCACTCTTTTTCGCTATGATTTAAGTTTTGTTCTCCAGTTAAATTGGATGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0137200.1 | 12 | 25812898 | C | T |
| Osa12LNT0137200.1 | 12 | 25812725 | C | T |
| Osa12LNT0137200.1 | 12 | 25812866 | C | T |
| Osa12LNT0137200.1 | 12 | 25812971 | T | C |
| Osa12LNT0137200.1 | 12 | 25813046 | T | C |
| Osa12LNT0137200.1 | 12 | 25813050 | A | G |
| Osa12LNT0137200.1 | 12 | 25813110 | T | C |
| Osa12LNT0137200.1 | 12 | 25813876 | C | A |
| Osa12LNT0137200.1 | 12 | 25814583 | A | G |
| Osa12LNT0137200.1 | 12 | 25813901 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0137200.1 | osa-miR5542 | Translation | 5.0 | 14.834 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR5816 | Cleavage | 4.5 | 12.267 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR5823 | Cleavage | 5.0 | 11.854 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR5823 | Cleavage | 5.0 | 19.868 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR1319b | Cleavage | 4.5 | 17.735 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR167d-5p | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167e-5p | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167f | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167g | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167h-5p | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167i-5p | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR167j | Translation | 4.5 | 14.908 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR438 | Translation | 5.0 | 18.323 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR528-5p | Cleavage | 5.0 | 10.93 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR1861d | Cleavage | 5.0 | 8.054 | 1 | 22 |
| Osa12LNT0137200.1 | osa-miR1869 | Cleavage | 5.0 | 14.604 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR2868 | Translation | 4.0 | 12.482 | 1 | 20 |
| Osa12LNT0137200.1 | osa-miR5144-3p | Translation | 4.5 | 17.937 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR5156 | Cleavage | 4.5 | 14.409 | 1 | 24 |
| Osa12LNT0137200.1 | osa-miR5499 | Translation | 4.5 | 9.437 | 1 | 21 |
| Osa12LNT0137200.1 | osa-miR5524 | Cleavage | 4.0 | 10.453 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0137200.1 | 12 | qLEI 4 | Resistance or Tolerance | Submergency tolerance | RM5479 | C901 |
| Osa12LNT0137200.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | R1709 | RM235 |
| Osa12LNT0137200.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | RM5479 | RM6953 |
| Osa12LNT0137200.1 | 12 | qSD12 | Physiological trait | Germination/dormancy | RM3331 | RM235 |
| Osa12LNT0137200.1 | 12 | qLEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137200.1 | 12 | qNEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137200.1 | 12 | qTIL12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)