© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0137300.1
ATAGCTGGTGATAATAAAACTCAGATGCTATGTATACAAACAACATTCCTACAATAGTATCTACCTAGCAAAACTACACAAACAAAAAAAAATGTATAAGATCCTCTTTGGCTCTTTCCATCTCCCTTTCAATTTACAACCATTGCTTTTCAGGCATCTTTTCATTCTTCTTTTATATCTTTCTAACCTGAAATCATCTTTTCCTTCAGATATCCAACCTTCCATCAGGGGCTCTCTTCTACCACAGTGCTACCAGCTACTGCAAGCATGGACACCTGGGAGTTGCTGTCTGAAGGAGATTTGGGTGGAGAGGCACTGAACTGAACCGGCTCAACTGTTCTGATTTTCAGGTCCATGACATCTGTGATCAGGCCTGGCCTCATGATCTTATCGCCAATTGCGCACTCGCCCTTGAGCATCTTGACGATCGTCGACATGGAGGGCCTGATCTTCGGAGTATCTTGAGTGCACAGGAGACCTATTTTCAGTAACCGTTGCGCTTCCTCGGTGTCGAAGACGCCTTTCAAGGTGCCGTCAACTAGGCTTTTGAGATCACCGGACTCGTAGAGCGCCCAAGCCCTTTCGAGTAGGAACTGATCTTGAAGAGGCAATCTGGGGTCAGTGTGGCATCTTCCACTGACAATCTCCAGAAGTAGAACTCCAAAGCTGTAGACGTCGGCCTTCTTTGTCAGCTGCCCTCGGATCGCATACTCCGGTGCAAGATATCCTAGTGTTCCTGCAACCCTGGTGCTGATATGCGTCATGTTGCCCGGGAAAAGCTTTGCCAGCCCAAAATCTGATATCTTGGGGCTCAGATCCTTGTCAAGAAGAATGTTGCTTGCCTTGATATCACGGTGGACGATGACCGGCCGGACTTCTTCATGAAGATACTTGAGCCCACTCGCGACGCCGATGCATATTTTCACTCTTGTTTTCCAGTCTAATTGGATACTACTATGGGAATTGCCAAAGAGGGACTGTGCAAGACTGTTGTTCTCCAGGTAATTGTAGACCAGCATTTTCTGATCTCCGTCGACGCAGCAGCCATGCAATTTCACAAGATTGTGATGGTTTATGTTGGATATGACACTCAGCTCATTTAAGAACTCCCTTGTTCCTTGCCTTGACTCGGAGGAGAGCACCTTGATGGCAACTTTCTGACCATTCCTGAGCTTTCCCAGGTAGACGCAGCCAAAAGAACCCTGTCCTAGTTTGTGTCCTGAGCAGAAATTTTTTGTGGCTTTTCTGAGCTCCTTGGAGGAGTAGATCTTCACATTTCTGATGATCGGTGTATCTTTGTCATGCTGCACAATTTGACTCCTGGATTTTTTGTTTCTCCAGAACGCAGGAAAGCAAGTCATTACTGTAATTCAGGGTTTTTCTTCTAGGACTCTTCAGCTATATCTTCAGAATATCATGTAGAGATCACCGTAAAAGTACTCTTGGTATAAAAGTATAAACCGTCTCTTTTCTTGTGTTTCTCCTTGCTGTGAGCCCAGAGAGCAGAAACGAAGAACAAAATCTCTAGAAAACTCAGAAAAATTGTAACAAAGAAATAAAGACATGAAGTATGCAAATCTGACAGAGAAACACTCGTCCCAGTCAGAGTTAAGAATTGTATGTTGTCCAACAAAATCCATGAGAAAAAACACTTGTATTCACATTGAATTGTAGAGTAACCAAGTTTGCGGTGTGACCGTTGATCTTCAGAAGATGAACTGACGGTTACAAACAGAAATAGATGAACTGATGATAAGCACAAGAACCGAAAGGAAGAGCCCATTAAATACAGTCTAATCCAAAGAAAACTGAACTAATACCTTTCCTGAAAAAGGTTTCCATGAAAAACTTTCCCTAGATGAATTGAAATATTCAGTAGAGACAAGAGCAATGAAATTCTTGCAACAGACCTAGACACAGAATTTAGTAGATTCAGCAATGAAGAAAAAAAAATCCAATAAGCAAAACTCACCTGAAGATCAGTTAATTCACCAGCAGAAAGACTTGAGGCCTGTAATCTGTATGAATATCCAAGAACAGCCAGCACCCAGCAAAGAACTCTTGGAGAAGAGGAGAAAGAAGAGGAGAGAGTATGAATCTGCAATTTTAGAAGCAAAAGCATACTGCTCTCTGCCCTGAATCCCTGAATATATGGGAGTCCACCAGCAGATGTCCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0137300.1 | 12 | 25821281 | A | G |
| Osa12LNT0137300.1 | 12 | 25820974 | A | T |
| Osa12LNT0137300.1 | 12 | 25821414 | T | C |
| Osa12LNT0137300.1 | 12 | 25821599 | C | A |
| Osa12LNT0137300.1 | 12 | 25821683 | A | G |
| Osa12LNT0137300.1 | 12 | 25822021 | A | T |
| Osa12LNT0137300.1 | 12 | 25822975 | C | A |
| Osa12LNT0137300.1 | 12 | 25824133 | T | G |
| Osa12LNT0137300.1 | 12 | 25824323 | C | T |
| Osa12LNT0137300.1 | 12 | 25824346 | A | G |
| Osa12LNT0137300.1 | 12 | 25824418 | G | A |
| Osa12LNT0137300.1 | 12 | 25824476 | A | G |
| Osa12LNT0137300.1 | 12 | 25821654 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0137300.1 | osa-miR172d-5p | Translation | 5.0 | 13.021 | 1 | 20 |
| Osa12LNT0137300.1 | osa-miR1882a | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882b | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882c | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882d | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882e-5p | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882f | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882g | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR1882h | Translation | 5.0 | 12.552 | 1 | 24 |
| Osa12LNT0137300.1 | osa-miR2929 | Translation | 5.0 | 20.757 | 1 | 21 |
| Osa12LNT0137300.1 | osa-miR5488 | Translation | 5.0 | 5.805 | 1 | 21 |
| Osa12LNT0137300.1 | osa-miR2929 | Translation | 4.0 | 16.475 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0137300.1 | 12 | qLEI 4 | Resistance or Tolerance | Submergency tolerance | RM5479 | C901 |
| Osa12LNT0137300.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | R1709 | RM235 |
| Osa12LNT0137300.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | RM5479 | RM6953 |
| Osa12LNT0137300.1 | 12 | qSD12 | Physiological trait | Germination/dormancy | RM3331 | RM235 |
| Osa12LNT0137300.1 | 12 | qLEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137300.1 | 12 | qNEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137300.1 | 12 | qTIL12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)