>Osa12LNT0137300.2

ATAGCTGGTGATAATAAAACTCAGATGCTATGTATACAAACAACATTCCTACAATAGTATCTACCTAGCAAAACTACACAAACAAAAAAAAATGTATAAGATCCTCTTTGGCTCTTTCCATCTCCCTTTCAATTTACAACCATTGCTTTTCAGGCATCTTTTCATTCTTCTTTTATATCTTTCTAACCTGAAATCATCTTTTCCTTCAGATATCCAACCTTCCATCAGGGGCTCTCTTCTACCACAGTGCTACCAGCTACTGCAAGCATGGACACCTGGGAGTTGCTGTCTGAAGGAGATTTGGGTGGAGAGGCACTGAACTGAACCGGCTCAACTGTTCTGATTTTCAGGTCCATGACATCTGTGATCAGGCCTGGCCTCATGATCTTATCGCCAATTGCGCACTCGCCCTTGAGCATCTTGACGATCGTCGACATGGAGGGCCTGATCTTCGGAGTATCTTGAGTGCACAGGAGACCTATTTTCAGTAACCGTTGCGCTTCCTCGGTGTCGAAGACGCCTTTCAAGGTGCCGTCAACTAGGCTTTTGAGATCACCGGACTCGTAGAGCGCCCAAGCCCTTTCGAGTAGGAACTGATCTTGAAGAGGCAATCTGGGGTCAGTGTGGCATCTTCCACTGACAATCTCCAGAAGTAGAACTCCAAAGCTGTAGACGTCGGCCTTCTTTGTCAGCTGCCCTCGGATCGCATACTCCGGTGCAAGATATCCTAGTGTTCCTGCAACCCTGGTGCTGATATGCGTCATGTTGCCCGGGAAAAGCTTTGCCAGCCCAAAATCTGATATCTTGGGGCTCAGATCCTTGTCAAGAAGAATGTTGCTTGCCTTGATATCACGGTGGACGATGACCGGCCGGACTTCTTCATGAAGATACTTGAGCCCACTCGCGACGCCGATGCATATTTTCACTCTTGTTTTCCAGTCTAATTGGATACTACTATGGGAATTGCCAAAGAGGGACTGTGCAAGACTGTTGTTCTCCAGGTAATTGTAGACCAGCATTTTCTGATCTCCGTCGACGCAGCAGCCATGCAATTTCACAAGATTGTGATGGTTTATGTTGGATATGACACTCAGCTCATTTAAGAACTCCCTTGTTCCTTGCCTTGACTCGGAGGAGAGCACCTTGATGGCAACTTTCTGACCATTCCTGAGCTTTCCCAGGTAGACGCAGCCAAAAGAACCCTGTCCTAGTTTGTGTCCTGAGCAGAAATTTTTTGTGGCTTTTCTGAGCTCCTTGGAGGAGTAGATCTTCACATTTCTGATGATCGGTGTATCTTTGTCATGCTGCACAATTTGACTCCTGGATTTTTTGTTTCTCCAGAACGCAGGAAAGCAAGTCATTACTGTAATTCAGGGTTTTTCTTCTAGGACTCTTCAGCTATATCTTCAGAATATCATGTAGAGATCACCGTAAAAGTACTCTTGGTATAAAAGTATAAACCTGAAGATCAGTTAATTCACCAGCAGAAAGACTTGAGGCCTGTAATCTGTATGAATATCCAAGAACAGCCAGCACCCAGCAAAGAACTCTTGGAGAAGAGGAGAAAGAAGAGGAGAGAGTATGAATCTGCAATTTTAGAAGCAAAAGCATACTGCTCTCTGCCCTGAATCCCTGAATATATGGGAGTCCACCAGCAGATGTCCC

Explanation	CPC Score
noncoding	-1.05361

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0137300.2	12	25821281	A	G
Osa12LNT0137300.2	12	25820974	A	T
Osa12LNT0137300.2	12	25821599	C	A
Osa12LNT0137300.2	12	25821654	C	T
Osa12LNT0137300.2	12	25821683	A	G
Osa12LNT0137300.2	12	25822021	A	T
Osa12LNT0137300.2	12	25822975	C	A
Osa12LNT0137300.2	12	25824133	T	G
Osa12LNT0137300.2	12	25824323	C	T
Osa12LNT0137300.2	12	25824346	A	G
Osa12LNT0137300.2	12	25824418	G	A
Osa12LNT0137300.2	12	25821414	T	C
Osa12LNT0137300.2	12	25824476	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0137300.2	osa-miR172d-5p	Translation	5.0	13.021	1	20
Osa12LNT0137300.2	osa-miR1882a	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882b	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882c	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882d	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882e-5p	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882f	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882g	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR1882h	Translation	5.0	13.294	1	24
Osa12LNT0137300.2	osa-miR2929	Translation	4.0	16.475	1	21
Osa12LNT0137300.2	osa-miR2929	Translation	5.0	20.757	1	21
Osa12LNT0137300.2	osa-miR5488	Translation	5.0	5.805	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0137300.2	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0137300.2	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0137300.2	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953
Osa12LNT0137300.2	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0137300.2	12	qLEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0137300.2	12	qNEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0137300.2	12	qTIL12	Resistance or Tolerance	Submergency tolerance	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus