© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0137600.1
GCACAATGCGGTCTAAAAAACTTGACTCCAAGTTAACATTGCTGAAAGTCGTAGAAAACCAAGCCTTGTATGCACGGACTGTTTGCACAAGGCCTCGCTACACTTGCATACAACAAAAAGAGAACTGCTTTGGTAACGTGCAACTTATTTTTCCTTCTTTTTCGACTGCCTTTACAATACATCTTCACAAGACAAAAGCACAAAAATTGCATGAATTATATAGACTTCTTTTTTGTTGAAACAATAACGACGACTATTGACTAGTCCATCCTTTCAAAACATAAGAGATTTTGGTTCGATTTCTGTGAAGATTCGTAGTACTATCATGTATTATATCCAATCAAAATATCTTATATCTTGGGATGAAATGAGTAATACTCCTACTTACACATGTCCTTTGTCGCCAAAAAGAATAAAAAATGAGCTATCCGAATGCTATTGACCTAACTATAACCTACGGATAACTTTGAAAAAATAATAACAAATCAGAATTAGCAATGACATAAATATAGGCATGCATATGACGGCCTGCCGGATTCGAACCGACCACCAAAAAGTGATTAGGTGAGCATGGAATTTCACCTCCATCCCATGCATATCCCCTTTGTATGCTCTTCCGACCGAGCACAAGGCCGTTGACACCTTATTGACACACATGAACCATACTTTTCCATTATTATTTTCTCCTTTTATTTTCAATTTAGTAACAAGCATTCACTTGTGATCTCACTGGACATGTATGCTATGGGCTAACACAAACATAGAGAATTTTCTAGTCACCCTTGAACTATTTCGTCAGATCCATTATTAGTTTAAACAGTTTTTTGGACCGCTTTACTATTGACCCACTGAAAATGGCTCATAAGTGGCATTTCCCTTTGTACAAAACACATTTTAAATTTAAATTGTATAACAGTAATTTGACAATGTATTGTAGCCCACTCTAAAAACAAGTACTGCACCGAAGTATATTTGGGCTCATCGTTCTTCTGTCCAAGGATTTTGGGCTTAGGAAGAAAGGGTCATAGCTTTGTGCCAATAATACGTTACGTACCCCCAAGTTGGAATTGTAGTGCTTAATATATATGGTTTCTGCGGTCATGAAGTGAGGCATCTTTTCTCTTTCTCACTCTCTAAACACTTCCATTCTTCCACAGTGAAAACCTTTCTAACATACAGCAACAATTGGTATCAGGTGAACAGCAATATTACCGTGGACTCTCGTGCAGCCAGTTCGCTCGTCCAATCAAGGAGCACTGTTGCCAAAAAAAACGTGGCAGCTATTCCAAATAGCCAAAAAAAAAAAGAATAAAGAAACCGCAAAAAACAGTGAGGGAAGGGATGTTATCGACTGGTGATTTGCTTGGGACGGTCTAGACGCCTAGTTTCCTCCTGAGCTGAAGATGATTATGCGACGTATATCATGCTGGTCTACGAGTGCACCTTCGGTTCCCACTAGGCAAACAAGCTAATAACAATATAGTACTCGCTAACTAATTAACATATCTAAGAATGTGTTCATTTTCTGTCGGTTGATATAACAAAATCCAGGACCTTTGTTTTTTTTTTCTTTTCTTTTTGGAACGGGTTGGTTGTTAGTGGCTTGCTTTTGCCCTGTTGTTAGCCTGCACAAAGTACATATAAGCTGGTAAAATACTTGAATTCATACTTACGATTGTGATATCAGATATTCATGCACGTCTGTATCCACCTGACCACATGATTCGGATGCTTTTTTTTTTCTGGACGAAATACATACACATACACCACGGATGATAGATTAAATGTATCCATGTACCTTGTCAGCAAGTAAACATGAACCTCGTTCAGGAGACACACTAAGGCAACCAACAAGTCCATCAGTCCACACTTGAGCGCTTTACCTTCCTCTGGATAGCCCGAATTAGTCCATCTAACCTAAATAAATAACGTGTTCAAATTCTTCTGCGCCAGAAAGCTCAGCAACTTTGTGATCTTTTTGCAGTACAGTATGTTCCACGATCCCATACCTTGCTACACAATTACCATCCTGTCAGTAAATCCAAGAACATTTCTGCAGTGAACTTCTGCCCAGTACAATCGACAAGCACGCATGACACATACATACTGGGGTAGCACCCAATTGCAGTTACCTCCTGACTTATAAACTTTACTTCCTAATTCATTGATCCGCGGCACCTCTGGGAACCACAATGGCATGGAATCTTTTTTTCCTCCAGTGGAAATTTATAATTATAAGTCAGTTCCTCGCCAGCATATATACGCCTCTTTGCATAAATGACAATCTTCTTCTGGCCCTCGACAGTAATTACTTTTGTATAGCAATTTGGATCACAAGAATGGTTGATGAATCTTGCTAACCCACCACGCTTAGTAGCATCAACCACATAGTCATCGTCCAAACGGAAAAGGTAACTGCTTCCAATTCCACTTTTCTCGTATTGATCCTCGCGTATGTCCGAGACCTGTCGGCGGATCAGCTCACCAACATATTCAATTACAAAATCTTCTGCATCAATAGACTCAAGAGCCACCAGACCCCATTCATGGATCTTACTCCTTTGAAAACGTAGCCGCTTCTTCCTTGACTTCGATTGCATAATTTTTAGTAGGTCAGTGCCTTCAGCGGCTGCTAACAGATTCCGTAGCTTAACCCGGTTTGTTCTTGCAGATGAGCCCTTAACTTGTGAACTTTTCAATACATTATTTTCTGGAGCTGAGAGAATACTCCTCACTCGGTAGCCTCTCACTTGAGCTCTTTCTGATGGAGTGGCATTGCGTGCCCAATCACGCCATTCCCATCCACTCACAGAAGCTCTTGCACAACCATATGATTCAGGACATAAAACCAACGGTTTTTTCTTCAGGTTGGACTCATTGGACAAGTTTTTCTGCTTTCTTTTCTTCGCAGGCATTGTAGATGTAGTTCTATTGTCAATAGGAGCTTCACAAACATACGATTCTGGACTTGTTAACGGTTTTGCCTTCAGTTTGGATTCACCAGACAAGTTTTTCTTTCTTTTGTTTACAGGCATTATAGCTGTAGTTCTTTTCTCAGTAGGCGCTTCACAACCATGTGATTCTGGAGATAAAATTACTGCTTTTGTCTTCAGGTTGGACTCAGTGGCCAAGTTTTTCTGCTTTCTTTTCTTTGCAGGCATTGCTGATGTAGTTCTATCCTCAGTAGGCACTTTGCTACTAACAAGAGGCTTACTGGTAGGATGGGAAGACCTGTTTCTCTTTGGCACCTTGTCGGAAAGGAGTTTCAAGTCCTGCTGGATATTCAGATTAATATTATCATTATGTGAAGGTTTGGCACGCTTTTTGGAGGGCTTCTCCACAACAGAAACTCTCTGCGAAATCCCAGCCTTGCTTGATCGATGGATATTTTTCATATTAACCTTGCATTCAACAAGATCACGAAGAGGTCTGGAGAGCTGCTCATCCATTGGTTTTTCTGATGATGATGCTTCACAGTTTTTCCTCAGTTTCCTCTTCCTGTAGTAAGTATATTCTTTGGGTCTCAATGTATCATCCATGGTTTTAGCCACAATATTTTTCCTGGCATACCATGAGTCAAAACAATTGCTGAGAGCACCTGAGAAGAGAGATGCCCACTCTTTCATTACACTCTCATGCAGTATTTGCCTGAAGAATGCCCAACTAGTATATCTATAAATGTCAAGCACTGAGTCTACTGATTTTGAGGGCTGGTATTTGTTTTTCTCCATAATCACCAATGAAGCTAAGCCAGCCTCTGTTCCAGGAGGCACCTCATCAAAACTGTCATCCAATTCAGCTTCTTCATGTGCATCCAACTTTTCAAATATACTTGCATGAGATGCAGAGGGCGATTGATGTTCCACGTAAGGAATGATCAGTTTGTCTGTTGTCACTTCAGGAACAGTTGATGTTCCAGATGCCGCCATATCAGCAGGGCAGGGTATTGTATCTACAGCCATATCTGAAATTTCATCTCGAGCCATTTCAGCCATATCCGAAATTTCATCTCGAGGCATTTCAGCAGGACTGGGCGTTTCATGCACAGATATTCCAGGAGGACTGGATGGTTCTGGTGCGTGAACAGGCGTACGAATTCGTTCTTGATTAATATCATCTTCAAATCCAATGCACAAACAGTTTGTTATCTCCTCTGAAATGACCTCCTCAAAATGCTGGAACAAAGCTTCCTTTGCTGCCACATATAGTTCATTTGCCAGCATTACCTGAACTCGTCCTAAGGGGCCAGAAAACAACGTGATACTTGATCCAGACCTCCCATCTGTTTTTTCAGTAACATACTCAACACACGCAGAGTGGGAATGCTCAGCAGATTCCTGATTTGGTCCAAATCCTGGAGGGAAATCCATGTCACTTTCAGGAGCATCTGAATCACAAATTGCCTTTGGTGACATTTCATCTGTGTCTTGCATCTTTTGGTTATCAGAGGCTCCAGGAACAACTGTAGAGAGAAGATTCGACTCATTTTTTCTTTTAAGCCATGCATCACAGTAGTCCATGACAGGATCATACAGTACTTCATCCCAGATACTCTTCATGGATTTGTTATAAATTGTTTCCCAAACTGCCGATAATATATCAGCAAATTCATACTGCATTGCAGTTGATTGAACAGCCACAGAAGGATCTTCCGGTACTTTATTATTATACGAGTTTAGGCTTTTTGGACGAGTAGATGTTCCATCACCCTTGCCCTTAAGTACCAAAGCATTCTTGTTACTCACATTGTCAGTCTTAGCAGCTTGGCTCTTACGTTTTGCAGCCATTTGCTTCTCTGTCTTCCTGCAAGCAATCATTTCTGGAAGTACGCTGCTAAATATTTCATCAATAAAAACTTTGCGGGCTGATTTCATAATTCCAGCATGCAGCTGATGGCTGATATCTTCAACTACATCATCCATTAAAGCGTTCAGTGACCCAGAATCATTGGCTGAAGATTCTGAATGCTCTGTGCCTCCACTCCACCAATCAATTAGTGATACAAGTGTAAATGGGCCAAACTTGCTATCAACATGGTAAATCATTGAAAGGTCATGTAGATAGCTACTGTGATGCCAATAAGAAAGTTCAGCAAGAGAATGTGGCCCATGCCTGCGGCCTTCTGCGTCCTCAAACATCCAACATGATTCTTCACTTGAAAGATTATCAGGAAGAATCAATTTGTTAACAGGGGCCATTTTCTTATTCTCCACCGATTCGTCTCTTGTGGCGACCACAGAATCAGAACTCCATTGTGAAAGAAACTGTTTCAGGGAACCTAAGGAAACAGGGTTGGCCATTTTCCCACCAAAAACGGCATAAATAGCAAGGTCTCGATGCAAGAAACCAGTGGATAATCCATCGTACAGTTGTTCAGGTGGATAAGGGCCGCACATCTGCCCAAGCTGATTCATATACATGCAGCCTTCCAAATTCTGATGCAGCATAGACCCGCCACCACCGTGCGTCCCGTTCTGGCCAGCTGAATACCCTAGCCCGGACTGCGGACACACCACACCTTTGCTATCGATGGAGCAGGCGTTCTCCTGCATCGCGGCAAACATGCTGGCGCTTTGCGTCTGGTCGCCGCTGCAGGAAGCCACCTGATGCCGGTCCGAACACCATCCAACGAAATCCCCCCGCACATCGCCGCATGCTGGCGCCGAGCACCCCTCCATCCCCGACTCCTCCTCCTCCTCCTCCTCCTCGAGCATCAACAGCCTCCCGCGCTTCCTCCCACGGCAAGGGTCAGCGCCGCGGGAACCCGACCCCGAATCGGAGCGCGAGTGCGGCATGGCGACGCCGGGGTCGCGTGGTGCCGGGTCGCCGCGCCCCACCGCCGCCGCCGCCGCCGCCGGTGGGTTGGAGTGGTTGCGTTGGTCGGATTGGCGATGAGCCTCTCTCTCTCTCTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0137600.1 | 12 | 25965425 | T | C |
| Osa12LNT0137600.1 | 12 | 25966688 | A | T |
| Osa12LNT0137600.1 | 12 | 25967491 | C | T |
| Osa12LNT0137600.1 | 12 | 25967687 | G | C |
| Osa12LNT0137600.1 | 12 | 25967979 | A | G |
| Osa12LNT0137600.1 | 12 | 25968701 | C | A |
| Osa12LNT0137600.1 | 12 | 25971695 | T | C |
| Osa12LNT0137600.1 | 12 | 25971799 | G | A |
| Osa12LNT0137600.1 | 12 | 25971961 | A | T |
| Osa12LNT0137600.1 | 12 | 25972319 | G | A |
| Osa12LNT0137600.1 | 12 | 25972412 | T | A |
| Osa12LNT0137600.1 | 12 | 25973202 | G | A |
| Osa12LNT0137600.1 | 12 | 25973978 | T | A |
| Osa12LNT0137600.1 | 12 | 25974408 | A | T |
| Osa12LNT0137600.1 | 12 | 25975041 | G | A |
| Osa12LNT0137600.1 | 12 | 25975560 | G | A |
| Osa12LNT0137600.1 | 12 | 25973918 | A | C |
| Osa12LNT0137600.1 | 12 | 25966206 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0137600.1 | osa-miR5540 | Translation | 4.5 | 17.026 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR5821 | Translation | 4.0 | 23.13 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR5823 | Cleavage | 5.0 | 13.166 | 1 | 24 |
| Osa12LNT0137600.1 | osa-miR5828 | Translation | 5.0 | 7.447 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR6248 | Cleavage | 5.0 | 19.342 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR6248 | Cleavage | 5.0 | 8.024 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR397b | Cleavage | 4.0 | 16.997 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR399k | Translation | 5.0 | 21.632 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR395v | Cleavage | 5.0 | 11.685 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR814b | Cleavage | 5.0 | 18.32 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR814c | Cleavage | 5.0 | 18.32 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR816 | Translation | 4.5 | 11.875 | 1 | 20 |
| Osa12LNT0137600.1 | osa-miR818a | Translation | 4.5 | 14.245 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR818b | Translation | 4.5 | 14.245 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR818c | Translation | 4.5 | 14.245 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR818d | Translation | 4.5 | 14.245 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR818e | Translation | 4.5 | 14.245 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR1854-3p | Cleavage | 4.5 | 21.762 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR1854-3p | Cleavage | 5.0 | 15.977 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR1861g | Cleavage | 5.0 | 17.941 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR1861g | Translation | 5.0 | 18.229 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR2095-5p | Cleavage | 4.0 | 16.183 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR2095-5p | Translation | 5.0 | 17.723 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR2870 | Cleavage | 4.5 | 20.539 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR2871a-5p | Cleavage | 4.5 | 20.186 | 1 | 24 |
| Osa12LNT0137600.1 | osa-miR1863c | Cleavage | 4.5 | 13.197 | 1 | 24 |
| Osa12LNT0137600.1 | osa-miR1863c | Translation | 4.5 | 15.671 | 1 | 24 |
| Osa12LNT0137600.1 | osa-miR2929 | Translation | 4.5 | 10.342 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR5081 | Cleavage | 3.0 | 13.237 | 1 | 22 |
| Osa12LNT0137600.1 | osa-miR5497 | Cleavage | 5.0 | 11.857 | 1 | 21 |
| Osa12LNT0137600.1 | osa-miR814a | Cleavage | 5.0 | 18.32 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0137600.1 | 12 | qLEI 4 | Resistance or Tolerance | Submergency tolerance | RM5479 | C901 |
| Osa12LNT0137600.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | R1709 | RM235 |
| Osa12LNT0137600.1 | 12 | nan | Resistance or Tolerance | Submergency tolerance | RM5479 | RM6953 |
| Osa12LNT0137600.1 | 12 | qSD12 | Physiological trait | Germination/dormancy | RM3331 | RM235 |
| Osa12LNT0137600.1 | 12 | qLEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137600.1 | 12 | qNEI12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa12LNT0137600.1 | 12 | qTIL12 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)