>Osa12LNT0138000.1

GCCCGCGAAAACAAAAATAATAATAATGTTATACTAGAAGAATCGAGGAAAATGTCCACTTTGACTCCCTTAATTGTACACCGAATCTAATTCGTACCCCTCAACTAGAAAACCGGATAGAACGACTCCCCGAACTATTGAAAACGGTGCAATTTGACTCCCCAGCAGTATTGGAGGGCGGTTTTGCTGACGTGGCGCTGACGTGGCGGCGCTGACCCAGTATTTGTCCCACGTGGCGCTTAAGTGGCATTACAATTTAAAAAATATATGTGGGACCCATCTGTCATTCACATAAAAAAATATATTGTGGGACCCATTAACATGTGGGGTCCACATGTCATCCTCTCTCTCCAACCCTTCTTCCTCCTCCCTCCCTCTCCCTTCTCTATCTTTTCTCTCCCTTTTTCTTCTCTATCTTTTCTCTCCCTTTTTCTCTTCCCCATCAGACGGTAGTGCGGTGAAGGGCGGGGGTGGCGGTGCCGGCTTCGGGAACGCGGGGGCGCGATGGGGCGAGGTGGGGC

Explanation	CPC Score
noncoding (weak)	-0.889016

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0138000.1	osa-miR435	Translation	3.5	10.722	1	20
Osa12LNT0138000.1	osa-miR2097-5p	Translation	4.0	3.647	1	22
Osa12LNT0138000.1	osa-miR2919	Cleavage	3.5	1.119	1	19
Osa12LNT0138000.1	osa-miR2919	Cleavage	4.5	5.035	1	19
Osa12LNT0138000.1	osa-miR2919	Cleavage	4.5	3.422	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0138000.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0138000.1	12	nan	Physiological trait	Eating quality	RM235	RM17
Osa12LNT0138000.1	12	qDRS12-1	Resistance or Tolerance	Drought tolerance	RG181	RG958

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus