>Osa12LNT0138700.1

AAAAAAAAAATCTCACGCGGCTAGCGAGCGCGCGTGATCGACTCCCGGCCGCCGCCCGGTGACTCGCCGCCGGCGACCGCCCGGCACCCCGCGCGCCCGCCCATCGCCCGTCGCGCCATGCCGCCGTCGACGGTCGAACGTCGCCCATTGCGGCGTCGCCCATCTCCGCATCGGCGCATCGCGCCGTAGCGCCGCCCGTTGACCTAGCTCATAGGGAGATTCGCCGCCGGTGAGCGCCCTGCGTCCCGCCCGCCTGCTGCCCATCGCGGTGCCGCCATCGACGCTCGACCGTCACCCGTTGCGCCGCCTCGCTGCCTCCACCCTCCAGCCCACGGCCTCACGCGCCCCGAGCCCACGACGCCGCCGCCCAGAGGTCCAGCTTCCACCTACAGACGAAGCCACGCGTGAATTGAGTTGAGCTGCTATCTGTCGGACTGTCACAAGTGCAAATTAACTTCGATTGATTGATCATGGATAAAGGGTGGATGAAAGGAGAACAATACATGATCTAACATGCAAGGATAACATAGGACATGAAGATGTACATTCTAGGACAAGTACTCTTGGAAAAGCCAGCGCTGGTTCCTTAAGTGCTATCAAGTTCACTAATAGCCAAGTGCTAACAACTTCACGGTTCTAGCTTATGAAAGCAATTATTGGATTTCATTTTTGGATTAAAGACATGTACGAAGATTATCGTTATCTGGCAAGTGTTCTGATGCCATCAGAAACAATTAGAAGCTATCACGTCAAGATATTCAACAACTGCACATGGCCCTTTATTGATTTGTTTGTCTTTTCCTCTCACTTGTAG

Explanation	CPC Score
noncoding	-1.06332

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0138700.1	osa-miR6256	Translation	5.0	18.156	1	22
Osa12LNT0138700.1	osa-miR1428a-3p	Cleavage	4.0	12.559	1	21
Osa12LNT0138700.1	osa-miR1879	Cleavage	5.0	9.417	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0138700.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0138700.1	12	nan	Physiological trait	Eating quality	RM235	RM17
Osa12LNT0138700.1	12	qDRS12-1	Resistance or Tolerance	Drought tolerance	RG181	RG958

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus