Transcript

Sequence

>Osa01LNT0011000.1

TAGTGAAGGTAGTGCTTGATTTATAGTGTTTTATGGTGAAGAAATTTCTCAAAAAAGAGTAATATTTATTCAAATTTGAGAGCAAAACGGAGAATAAATTTGAAAATTGGAAAAAGAAAAAAAAATGGGCCGGCCCGTTACTGTGCAACCCATTACACATCGCGCGGTAACCGCGCCAAACCGCGTGGTTACCGCGTCAAACCGCGCGGTAACCGCGCCAAACCGCGCGGTTTGCCCGAATTTTTGAATTCAAATTTCGATTTGTAAATTTGTCGCGGTTTTGCGCGGTTACCGCGGTTACCGCCGGTAACCGCCGTACCGCCGGGTGGCGGTAACCGGGCCCCCGGCGGTTTTTGAAACCCTGC

Coding Potentia

Explanation	CPC Score
noncoding	-1.3363

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0011000.1	1	8184755	T	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0011000.1	osa-miR2101-5p	Cleavage	4.0	22.403	1	22

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0011000.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0011000.1	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0011000.1	1	nan	Resistance or Tolerance	Insect resistance	RM576	RM3412
Osa01LNT0011000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0011000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0011000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0011000.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0011000.1	1	An9	Morphological trait	Panicle/flower	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus