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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0011100.1

GCCAGAAATAGTAAAAATACATCACATAAGTTACATCCATCCAGAATACATGAGGAATCTCCCTTTTGTGACAGATAATTGATGTATCTTACTATCTTCGCTTCTTCAAAAACAAAACCATGTCAAATGTTATTAGTCCTATAAAATTTTGGTACACACACAACAAATTGGGGAAACGCAGTTGGCTTCTAGCTAGTGAGATACAGATCACAAGTACCTTCATTTACTGCAATCTACACACAGTAAAATTTTCAAGGGATAGATACACATCCTGCTTGTTACCTGCGCCTTAGATCTCTTCTTGGACCACGGTCTGTAACTGGTGTTGGTCTGCTACCTGTGTTATCTGCCTGCTGAATCATCTGTGGGCTATCATGCTTATAGAATGCTTGTAAAGTTCTCACCATGAAAGGACGCACGATATTCACTTCCATTGCAGAGAGATTTTTTAGCTTTACAGCATGAGTACGGCCAGATATTGTCTCCAGACCAGTCTCAACCTTATGGAATCTGACATCTCGGATGTCCTCAATCAAAGATCTTACCAGGTATGCATCTGAGATGTCATCACGAGCATGATCAAAGAGAAGCTTAGATATTTCAATATAGTGGAACGGCAATGGCTGAAATTCTTTGGGTGACTCTCTTTCTGCATCTAATACCTGCGTCAAGCGGTCAACAGTCATCCAGTCAGGTGTGCGTATGGTACATTTGCCACGCTTCTTGAGTGCAACCGCGAGCCAAAGAGGCACTTTGCTTGCAATTTGCGGGAAGAAGGGCCCAAAATCCCCGCATATCATGTTGAGGGCCTCCATGCGAATGTTAGGGACGATCTCGACAATCTCATCCTCCGCCACGAACTCCACCTCTGAGGGTGAGAAGATAGAAAGATGAGGGTCAGACTGCCCAGCCATCTTGACCACCGTGGCACTAAATTGCTTCCTCTATTTGATGATTTAGTGTCTGTAAACTGAGCAAATGGGAAAGGGAAACCCACAAATCGTCAAGCAGCCCGGCCGCTAGCAGCCAGAAGGGGCAGGCAATAAACCGGGGCCAGCCGGCTAGGGTTCCCGAGGTCCCGGTGCCCGAGTGCGGCTGCCTCACGGTGGCAGTGGCCCGCGCGCGCCTCCACCCTCTCCGCAGATTGAGCCGGAAAGACGAGGAGAGGCGGAGGCTGCGAGGCGAGGGGAGGAACAGCGGCGACTCCAACCCTAGCTGCCGCCTG

Coding Potentia
Explanation CPC Score
noncoding -1.39105
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0011100.1 1 8181327 G T
Osa01LNT0011100.1 1 8181432 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0011100.1 osa-miR399d Cleavage 4.5 20.465 1 21
Osa01LNT0011100.1 osa-miR399j Cleavage 4.5 20.465 1 21
Osa01LNT0011100.1 osa-miR1850.2 Translation 4.5 13.247 1 21
Osa01LNT0011100.1 osa-miR1861d Cleavage 4.5 15.132 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0011100.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0011100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0011100.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0011100.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0011100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0011100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0011100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0011100.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus