>Osa02LNT0139200.1

AAACAAACGATCCAAACTAATTATATTATACATATATAATTGATCAAGTCGACTCCAGTTCCCGGGCAAAACTTTGTTCCGGTATGTGCAGGGCTATAGAAGGATGATTAATTATTTTCTTATTACTACATAAGCAGCTAGTGCTCCGTTCCTCAGCTGGCCACTCAGGTCAGGTGTAGTTCTGGATAATCTTGGAGAGGGATGAGTATGTCCCCACGCAAGCGCAGCAAACCCCTACCACGATGATGAATGAGCAAGCTGCAATCTGATGCCAAGTCACTTTTCTCTTAAGGATGGCCAAGAAACAGGCGCATGGAAGGATGTAGGTCACAAGCATGGTGAGTAAAGAACCAACCAACGCCATAACTAGCCCAAAGAAGGGGACAGATAGAGCAATGAGGAGGGTTGAGACCACCAGGGAGGATCTAAGCATGATTATGTTCGCATACTTCTGCTGATTTGGAGGCAGCAATTCTTCCAAACTCATAGCCAATGGGGTTATGGTCAATGCATATTTGGTTATTGGATTTGCCACCGTGGTCCAGACAGCAACCTTTGAAACCACCAAATTCTCTGGTAAGTTCAGCGTGAACTGAGATTCAGTGGACTCACCAAACATCTTATATCCCATCACAGCAGCACCGGCAAACAAAATTGAGGACAACCCAATACAAGTGAAAAGAATAGAAGGAAACTGGTTGCGATTCTTCAGAGAAGAATAGATGTTCGGGAACACACCATGTCCTGAGTAGCAATAACCATACAGTCCAATTGCGATGGGAATTCCTGGGAGATTCAGTGCAGTCCCTTTGTTCTCAAAACCAACATGGTCAACAACCCCAACCCAGCATAGGCAGACAACTACAAGGATTGATGCAATGACACCCCCAGCTGAAAGATAACTCAGACAGCTAAGGTCGCGGAGCCAAGTGGTTGGCATGACTATGAGGGTGGTCAAGATTGCGAAGAACACATGAGAGTTTAGTGTCATGCTCCCAATGGTTAGATGTGCATTGGGGAATAACTTTGACAAATTGTCGCTCTCCAATATCAAATACTCAATGCAACAGGCATACAGTTCGATGTACAGGATTATCGAGATTGCTATACGTCCAGTGGTGCCAAAGGCGGCATGACCAATATCAGGGTATGTCTCAAGACCCTCCTTGCTGTCCAGACAACGTCGAAGGAGCACTCCGGTGTACCAAGCGAGCACAGCAAATAAGCAAAGTATCACCAGTCCAAGCCAGCCTCCCTGTTTAATGGCATATGGAGTCGATAGGATCCCCACACCACACAGAACATTTATTCCATTCATCACTGCCTGGGTGTAGGAGCATTGTTGATAAGCCGGCACCTCATGAGCCGGCACCAATGGTTTTTGATCCTCCGGGATCTGTTGCAAAGACGGTTTTCTTGAGGGAAGCAGGTACTGGGAACTCTTACGGGTATCATCGTCATGCTGCTGCTGCTGCTGCTGGTCGTCGCTTGAAGATGATGGGCGTAGAAGTGGCTTGACAAGATTAGAGAGAATTTCAGGGGTTTTGCCACGAAAAGAGTTGGTGAGGAATGAGTTGGAGAGCCTGCTTAGAGTTGGAGTTCCCAAAAAGCTCAGGTTGGGAGACTGCACGCTACTATAAATGTCGATTGATTGCCTGTAGCTTTGCGGCCATTGGTGGGTGGCGTAGGAGCTTGGGCGCGGGGTAGCGCAGGAGGAGTCGTCGGAGTCGGAGTCGGAGTCGGCATCCTTGAGGAGGATGGAGGAGTGGGGGTGGGCTTCCTCGTCCTCCTCCTCCTCCTCGCTCTCGATGAGGAAGCTGTTGCTGCCGCGCTCCTCCTCTGACGCATAACGAGAAGAAGAGTTGTTCATCTCGTGGGATCTCATCTCTTCTCTTGGAATCTCCTCTCCTCTCTTGGGCTCTGCAAGTCTGCAACTGCAGTCCTCCTCCTATACAAGATTAGTAGCAGTACAAGAACAAGAGCTGTGTGTACTGATCAATGTTAGAGATAATGCCAAGACCTGATTAGGATTAAATTAGTTCTCCTCTCTCTCTCTCTCTCTCTCTCACTGTCGCACACACACTTTTAGCCCCAGCTGATGCAAGGGAGAAGGAACCATTGGATGACTCCACA

Explanation	CPC Score
noncoding	-1.19103

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0139200.1	2	50588	A	C
Osa02LNT0139200.1	2	51075	C	G
Osa02LNT0139200.1	2	51989	A	G
Osa02LNT0139200.1	2	52303	T	C
Osa02LNT0139200.1	2	53054	T	C
Osa02LNT0139200.1	2	53252	G	A
Osa02LNT0139200.1	2	54773	G	A
Osa02LNT0139200.1	2	55317	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0139200.1	osa-miR5827	Cleavage	4.5	18.551	1	21
Osa02LNT0139200.1	osa-miR162a	Cleavage	3.5	16.463	1	21
Osa02LNT0139200.1	osa-miR393a	Cleavage	4.5	18.199	1	21
Osa02LNT0139200.1	osa-miR162b	Cleavage	3.5	16.463	1	21
Osa02LNT0139200.1	osa-miR166l-5p	Cleavage	5.0	15.517	1	21
Osa02LNT0139200.1	osa-miR169d	Translation	4.0	15.873	1	21
Osa02LNT0139200.1	osa-miR172b	Cleavage	4.5	14.692	1	21
Osa02LNT0139200.1	osa-miR1861d	Cleavage	5.0	18.23	1	22
Osa02LNT0139200.1	osa-miR1861h	Cleavage	5.0	18.23	1	22
Osa02LNT0139200.1	osa-miR1861j	Cleavage	5.0	18.23	1	22
Osa02LNT0139200.1	osa-miR1865-3p	Cleavage	4.0	15.182	1	24
Osa02LNT0139200.1	osa-miR1865-3p	Translation	5.0	21.743	1	24
Osa02LNT0139200.1	osa-miR5077	Translation	4.5	19.212	1	19
Osa02LNT0139200.1	osa-miR5161	Translation	3.5	19.24	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus