>Osa02LNT0139400.1

AGTACAAAAACAGTACGATATTATCGATCACACATGTACACATGATGGTTAACAACATAATAATAGCAAAGTAATAACATTCCAGATACACAGCAAAGGGTTTCACCAACGAATCAATCCTTCTTTCGACAAATATGTAAACTACTATTGCCCCTTCTTTTTTTTTCTTTATTTACATGTACGGCAAAGGATAGAGCTCCTCTTCTCGGTGCTCGCGAGGCTGCCCACGCCACATATATGGAACTTGATTTCACTGTGTCTGAAGGGAGACTCTGTCCTTCAAGCTTTGTCCACAGCGGCTGGTAGCCTCAACCTATTATGTCACACGGGCAACAAAGAAACTAATTCTGGATAAAATTGATAGGGCATTCAATGGTGAGCCCTGTATGTTAGTTATCATCAACTCATGATAGATCAAATGATCCACGGCCTTCTAGGATCGCATAAAGCAATTTCTTGCGCATCACTTCTTTTGTGGAGTATGGAGGCAATTTAAGATAATTAGCACATGTCATAACACTTGGCAGATCATCATCTGCAGACTCTGTAACTCCAGCGATATTTGAAGTATTCACCGCACTTGAGGGGTGCTTCCTAACTATAGTAAGCTTGGGATTAAGGGCAGCTAAACCACCAGGCGGAAGCCGAGGAGCACCAGTTACAAACTGGCAGAATGCATGTTGTTGCTCTGGGGTGAATTCAGCCATGATCTCGAGTAGATTTACAATTGCAGGACTTTTAGCAGTATACCCATGATCAAATTTTATATTATCCACCAATGAATCAGGCTCCCAAATTTCTCGGCGACCACATATTAGATAGTCAAGCTCTTCAGGTGAAAATATTTTCAGGGATGAGATGTCAAAGACCTGGTTAAATCCTGATCTAAATGCTTCGACTTGCCTCATTATCCCTGATTTAACTGTAGCATCCACTACCAAAGTAACATACTCTTCCAAGTTGTAAATATTTACAATTGTGTTTTCCTCGCCTTCTTTAAGAATATAATCAGGATAACCTGGAAGAGTAAAATCTAAACACAAATCTTCGATAGGAGTGCCACGGAAACGCAAGTCCGTGACTTCTAGCTGATTCATGCCATAAGTGGATTCAAGGAACCTCTTCCGTTCAACAAGAATTTGCAGTTCTTGCAATGTCTTTCCGAATTCAGCATCAAATGAGATTATGTCAAATAAGTCCAGCTCTTGTCCAAGTATAAGCTTATAAAGTGCTGTTGATAGAGGCAAATCTAAAAGTCTTCCATCTTGCAAAACTTTTGCCATCACTCGCCCAACCAAGCGGAAATGTTCGATGACCTTAGAAAATCTACTGCCTTCTGAAGCATCAACGGTAAGTGGCCAAGGCCGAGGAAACAATCCAAAGGGAGCTTGTATCAAGTGGCTGCCATTGTCAGGTAAATCTGAGCTGAGTTCTTTGGCTGCCAAGTCATCGTCGGGACTTGCGCTCCTATCAATTTGCATTCCCGTATCAGATGGAGAACTAGATCTCCATAATCCAAGGCGAACACTCTGGAGTTCATGGCTTAAGAGAGTATAGAACTCCAAAGTGGGCCCAAGCCCTGTTCCAACTTCACCAAAGTATTCTACCTCAAGAACAGCTCTCTGACTGGAGAACATCTCCATAACTTTAGCAGCAGAATCCAGAATACGGTTACGGGAAACACGAACTTTTTGACGTTGTAGCCTTCCAAATCGGATCTCCCTTTCGCCACCAGCATTTTGGTTGTCACCCTGTTGTTGCTGAAGTCGATTCAAAGCACGGGACAACCCAAATGCTGTGGAGTAAAAGTACTGTCTCCTTGTTTCAAAGGGAAACAAGAAAGGGCAGGCTTTGGTCATCTGGTAACACCAAGAAGGTAAACTGCCACTACAGAGGGCAAGAACATCCTGCATTTGCCGAGCAAGCTTTGGTGTCAACTTACTATTAACAAACTCTTCTGACGGTACCTTGGCTCCAGTTCTATATAGCTCATCCAGTGTGGTGATTTTTCCCTCAGCAAAATCATCAGAAGCAGCATGTACTCTTAAACGAGGGGACAACTGATTGAGCCCCTCTAATACACGCAATAGTGCTAAAATGTTGTAAGTTGAGTTTGTTCTCTCTAGATCACATGGGAGTTCTGCCTGTAAGATGCTATCAAGGAGAGAAACACCTTTCAATTCAGATATAGATCTTGAAGGATCTGATTTTGAGTTCAACGAGGTGGAACCACCTTGGGATACCTTCTCAGCCTGGCTATCAGCCTTCTGGTATGTTATCGTGAACACATCACCCCAAAATCGATTTCCATCATTTGACAAATCAGATCCATTAAACTTCTCATCATCATCCTCTTCAAACATCAGCTGACGTTGGAGAGCTTGATACACAGTCAGATGTTTGCTGAGCTGCTTCCCCCCAGCCATAAATATCAGTTTATTGTGCTCATTTATGCTACCTCCAAGTGACAGGCCACGTCGATCGCGACTACCTCTAACCCCCCGACCACCAACAGAAGCCAGCCCAGCCATTGTCGCAGCAACAAATGACATTGCACCTCGTGAACCAAAGGTATTTGGATCTACTCCCCTGCTCATGATGTTCCTAGTGCTGGAACCAGATGAGGGCTGCACTTGGCTATCACTTGCTGAACCAATGTTAGAGTCATCAGTGTCACCCAATTTCACGTCATGCACCCCATCTTGAACACAAATAGGAAGAGAGCCATCTTGGAGAACCTCATGATCATCTTCTTCATCCTCTGACATGTCATCATCATCAATCATTAAAGCGTCATCAATTTCAATAGGAGATGTGTCAAGCTCCTCATCCTCAGAGCTGCTGTCACCATGTGCTCGCTTCATTTCCAGATCTTTCTCTGAAGCAGCTTTTCTGCGAGTAGCATTCCGTGTATTAGGTCCTTTTGGT

Explanation	CPC Score
noncoding (weak)	-0.993276

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0139400.1	2	87938	A	T
Osa02LNT0139400.1	2	88206	C	G
Osa02LNT0139400.1	2	90291	G	A
Osa02LNT0139400.1	2	90340	T	A
Osa02LNT0139400.1	2	90833	A	T
Osa02LNT0139400.1	2	91240	G	A
Osa02LNT0139400.1	2	91396	C	T
Osa02LNT0139400.1	2	90377	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0139400.1	osa-miR5542	Cleavage	3.5	24.014	1	21
Osa02LNT0139400.1	osa-miR166c-5p	Translation	5.0	16.346	1	20
Osa02LNT0139400.1	osa-miR1866-5p	Cleavage	4.0	16.798	1	24
Osa02LNT0139400.1	osa-miR1877	Cleavage	5.0	9.797	1	24
Osa02LNT0139400.1	osa-miR2866	Cleavage	4.0	11.24	1	20
Osa02LNT0139400.1	osa-miR5082	Cleavage	4.0	12.224	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus