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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0139600.1

GAGCCTTTAACAAGCACATGGAAGTATGCTGGTAAAGAAATGATTCCCGAAGGCAAATGTGGAAGCAAATCATCAGCAAGGCTCACTATCTCAAACATCTGTTCAGCAGGCCTTGACAAAGCTGGGGAGACTGATGCTCCAGCAACCAAACCAGAACCTGAAAGAATATCTTTAAGAGTACCACTGATTCCAAGAAGAAGAAGTGTTTTGGCTGCTAAAAGCGACCCACTCGCACATGTTGAGAGAAGACGAATTAATCCCGTATATGTTGATGTACTCAACGAGGCCTGGCCTGCGGAGTTGCTGATTGATACCAGGCTAGCAGACTGAGCAACCAACCCATGATTGCACAAATCATCCAATTTCTCTGGATAAGAAGCAAAAGCCTCTGCAACGCGTGTCAAACAAACAGAAGCATGTTCGAGCACCTTAGAATCATGGTGGTTCAAGAGATTCGTGAGCAACGGAACAGCTTCCATGACAAACTCGGACGCATCAGATGGCAGCTTCCTGCATATATTAGCAGCAGTAGACAACGCAACTCTCTGAACACCAGTAGAGAAGAAGTCCAGATATGACAGGACAGCCATTAGCGCACCAGCTCGTAAACAGGCAGTTGGATGCTCCTGGGAGATCTTCTTGAGGGCTTGTAGCGACTGCTCGGCGAGGTCCATGTACTCGATGGTGAGCAGGCGAGCACAGAAACAGGGTATAGCCCCATAGTGCACGACGGCAGAGCAAGAGGAGGGGAGGACGTCGACGAGATTGGCGAGGGCACGGGCGGCGAGCAGCATGACATCGGGGCTGGCGCCGCCTGCACCATCCTCCCCGGGGCCGAGAAGGCCAACGAGGATGGGCACGAAGGCATCGACGGGGAAGGCAGCGAGCGACTCCTCGGTGCCGATGGAGAGCATCTCGCAGAGCTGCATGAGAGACTGGAGCTGGCGCGACTCGTCGCCATCGGACTGGAGGCCGGAGAGGATCCGCTTGAGCTGGGCGGAGGTGGAGGAGGAGGAGGCGGCGGCGGCGGAGGAGGGGAGGAGGTCGTCGAGGCCGGCGCCGAGCCTGCGGAGGAGGCCCTGGAGGGCGGTGCTGGCGGAGGTGAAGGAGTGCGGGAAGGGGGCGACGGCGTCGTCGTCGTCGGGGGCGGAGGGAGGGGAGGGGTCGGAGGAGGGGTCGGGGTCCTTGCCCTTGTCGGAGGCGGAGGCGCGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0187393
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0139600.1 2 94212 G A
Osa02LNT0139600.1 2 93865 A G
Osa02LNT0139600.1 2 95610 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0139600.1 osa-miR812q Cleavage 5.0 16.954 1 24
Osa02LNT0139600.1 osa-miR171f-5p Cleavage 4.0 19.175 1 21
Osa02LNT0139600.1 osa-miR1430 Cleavage 5.0 17.064 1 21
Osa02LNT0139600.1 osa-miR2102-3p Translation 5.0 19.226 1 22
Osa02LNT0139600.1 osa-miR5075 Cleavage 2.5 19.237 1 21
Osa02LNT0139600.1 osa-miR5075 Translation 4.5 20.405 1 21
Osa02LNT0139600.1 osa-miR1431 Cleavage 4.0 19.608 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus