\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0011200.1

GTACAATACAAACTTGTTTAAAAATATCCATTGACAAATAGGCCGTAGCACGACTGGAGTGCAACGCCGTATGCAAACAATGGTTTAGTCTATGCTGAAATTTGGCACAGATATAGGTAAGCTGTGCGATGAATTAACATCGGTCTTTGAAAAATACAACATTTCTTTTCATATCTATGGAAACATCAAAGACATCATATCCTTCCCTGCGATCCACGAACAATGAGCTGCTTTGAATCATGAGGTTCCCAACAGAACACTCCCTGAGCAGGTCAGTTGATGTTCATATCCTCAGCACCAGCACCGTCTCCATCCTCGTTTTCTGATGAGGTGTTAATCAAGCGCCTGGAACGCTGCTGCTGTTGTCGTGTTGGCTGCAACTTTGGCCTAAGTGCCTCAAGAGGTCCTTTGGGTTTCGCAGCGCCTTGCTGTCCAGACTTTCCCAGAGCCCAGTCAGCAGAATCAAAATAGGCCCGTTCATGATCCTTCGAGATGAGTGGTGGTTTTTTTGGCATTAGTCCTCCAAATTTCTTCTTGATTGCTAATTCCTGTTCTTGAGCTGAGGGCATGGAGTTATCTTCAGTTTGGTCCATAGGGTCAGGATTTCCAACAGTTTCAGGTCCAGCAGCATTGGTGTCCTTCATATCCGACATGATGCGGGATGTGATGCGGCGGAAGCAGCAGGACGGCGGCGGAGATGGAGATCGGCGGAGGCGGTGCGCGAACTCGCGAGGAGAGGAGAGGAGTTGAC

Coding Potentia
Explanation CPC Score
noncoding -1.10884
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0011200.1 1 8213757 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0011200.1 osa-miR166a-5p Translation 3.5 14.151 1 21
Osa01LNT0011200.1 osa-miR166e-5p Translation 3.5 14.151 1 21
Osa01LNT0011200.1 osa-miR159c Cleavage 4.5 24.059 1 21
Osa01LNT0011200.1 osa-miR159d Cleavage 4.5 24.059 1 21
Osa01LNT0011200.1 osa-miR159e Cleavage 4.5 24.059 1 21
Osa01LNT0011200.1 osa-miR1428b Translation 5.0 19.308 1 21
Osa01LNT0011200.1 osa-miR1428c Translation 5.0 19.308 1 21
Osa01LNT0011200.1 osa-miR1428d Translation 5.0 19.308 1 21
Osa01LNT0011200.1 osa-miR5152-5p Translation 5.0 12.417 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0011200.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0011200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0011200.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0011200.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0011200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0011200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0011200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0011200.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus