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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0139700.1

GTACCGTCTTTTGCAGCGAGGTCGATCATGATGTCGTCGATGCCTTTCTCCATGCCCTTGAGGCCGCACATGTAGACGTAGGTGTTGTCCTTCTTGAGCAGCTCCCACAGCTCGTCCTTGTACTCCGCCATCCGCGTCTGGATGTACATCTTCTCCCCCGCCGCGTTCGTCTGCTCCCGGCTCACCGCGAAGTCCAGCCGGAACCTCTCCGGCGCGATCTCCTTCATCCGCTCGAACTCCTCCCTGTACAGCAGCGTGCTGCTGGTGGGCACCCCGAGGAAGAGCCACGCCAGGCCGTTGAACTTGTAGTCGTCGTGCTCCTCGAAGAACATCTTCCACAGGAAGGACCTGAAGGGCGCGATGCCGGTGCCGGTGCCCAGCATGATGATGGTGGCGTTGGGGTCCTTGGGCATCAGCATCTCCTTCCCCACTGGCCCCGTGATCTTCACGTCCGAACCAGGCTTCAGGTCACCTAAATTATACTCCATTAATTAGCACACAAGTACAATCTAACTGCTATTACATGATCAGACTCCTAGCTTACAGAGGAAGTTGGAGCAGACTCCTTTGACGATCTCTCCCTGATCGTTGGTGTACACCAGCCTCTTCACGCACAGCGATACCGTCTTGGAGTCGGCGAAGTCCCCGATGGCGCTGCTGGCGATGGAGTAGAGGCGGAGCTTGTGGGGCTTGCCGTTCTTGTCGATGCCGTCGGGGATGACGCCGATGGACTGCCCCTCGCGGTAGGGGATCTCGCCGTCGGTGCTGAACACCATGTGCCACGTCTCACCGGGGGCGTCGTCGCCGGTGATCCTCGTGTTCAGGAGGCACCGCCCCGTGTACGGCTCCTTGGGCCTGTACTTGTTCGTCACCACGCCATCCACCTGCTTCTTCGACACCTTCTCCACCTTAGTAGTCACCTCCGCAGCCGGCGCTGCGGTCGTCTCCGTCGTCGACGCCTGCGCCCGCACGCCATTACCGCTGCTTCGCTTGGACCAGCAACGAGGAGGGTAGAATACGGAGCAGGTCGACGGCCTCGGAGCTCCCCCGGCTACGGCGGCGCCAGCTTTGCTACAGGGCAGCGACGACACTGTGTTCACGGCGGCCATGTCTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.91999
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0139700.1 2 184565 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0139700.1 osa-miR5813 Translation 5.0 15.065 1 22
Osa02LNT0139700.1 osa-miR159a.2 Translation 4.5 23.431 1 21
Osa02LNT0139700.1 osa-miR390-5p Cleavage 5.0 19.352 1 21
Osa02LNT0139700.1 osa-miR1432-5p Translation 5.0 22.868 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus