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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0139900.1

GGTAATATAAACGAATGGAGTACCATTATTATTATTGCAATCTCGCTCGAAATGAAAAGGAAAAGGGATATATATAAATGATATACTCACTCCGTCACAAAACAAAATATAGCTAGTTTTACCGGAGACTAGAGAGGTGTAATAAGTAAATTAGGGGATGATGAAATTAAAAGACTCGAGAGTAACCACGAACGAAATCACCGTTTTGGAATGCGTAGCGTATAGACTTGTGCACGACGACGGCGTCGTCACTGCCCACCACATCAACGCCGGTGAGCAGCAAGAACCTGTCGTTCTTGCTTTTTTCGCCGGCGACGCGGAAGAATGGATGAAGTGAGATGTTGTGTTGCTCCTCCTCCTCCATGAACCTGGCGATGCAGAACCTACCGGAGCCGAGGTGCACGGCATAGGTCTCCATCAGTAACGATCGCTTGGGCGGCGCCGCCGCCGGCAGCCGGTCTAGGCCATCCAACCAGCACCTGACCATCACCTGCGCATCGTAGGAACAGCAGAGATAGGAGAGATCGCAGGAACAGAGGTACAGCCCCAGCCTCGGCGTGGAGGAGAGCCCAAACCATTGCCCGTGCTCCTCCACGTACTCGCCGCGCCCCATGAACGGCATCCCCTTTTCGCCAAGCTCCCTCCACTCCCCAACCTTGGAATTCGTGTCGAACGAGAAGGTCCCGGCTCCGTGCGCCGCCGTCACCCAGAGCTCCTTCGATTCGTTCAACTGCACCACCGCGGAGGCGGTGATGTCGTAGCCAGCCTTGGCGAAAGGAGGCGGCGGAAGAGACCGCCAGTACCAGCCCATCCTGGAGGACAGTGAGTCGTCGTCGTCGGGGAGTAAGCCGTAGGTGAGAGCCTCGAAGCAGCCGGGGTTACCGGACAAGGGCACCCTCTCGATGACGTAGAGGCGGCCATCGTCGGCGGTGAAGGAGATTGGCTCGATCTTGGGCTTGCACGGGTCGGGCATGTAGCGGACGGCGGCGGAGGCGGCGCTGTAGAGCAGACCACGGCCGTCGACGTCGAGGGCGAGAAGGCTGTCGTCGCCGTCGCTGCCGCCGCCACTGCCGTAGAGGTACAAGAAATCGACGTTTCCAGGGCCGGACAATGAGGAAGGGTGGAAGGTGATGGCCGGAGGAGGCAGGCCGCCGGCGGCGTCCTCCACGTCATCTGGATCTAGTACTTTGGCTGCTTGCCGACGTGCTGGACATGAAAAGAGGGCCGATGCAGCGACGCGGTACAGCTTGTACGCCGTCGCGTCGCCGCCGCCGCCGGCGGTGTCCACCACCAAATTCACAAACCGCCGCATCATCGTCTCTTCTGGAGTATGCAGTCTCGCTCGTCCTCACGCGATAGGCGGACCGCCGAATCTCCTCTCCTCGGTGGCGCGTGATCTCGACGGCGGGGCGGGATCTCGG

Coding Potentia
Explanation CPC Score
noncoding -1.15062
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0139900.1 2 434803 A G
Osa02LNT0139900.1 2 434871 T C
Osa02LNT0139900.1 2 435451 G C
Osa02LNT0139900.1 2 436035 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0139900.1 osa-miR812r Cleavage 4.0 20.63 1 24
Osa02LNT0139900.1 osa-miR5805 Translation 5.0 16.509 1 24
Osa02LNT0139900.1 osa-miR7693-5p Cleavage 5.0 18.686 1 24
Osa02LNT0139900.1 osa-miR1439 Cleavage 3.0 13.517 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus