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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0140100.1

CAATTTATTTCATCATTTTTTTATTACCAGTATTGTCCTTGGAGCAGCAATAACAGCCAGTGTCAACGGGAGAAAAATATTACATCATCAAAGCCGAGTTTATGACCCTACAAAAGTTGAATTCGCTTTGCGCTCTCAGTACAAACTCTCCGAATGACATAGTTTCAGCTACACTCCCTTGGGGAGCCCCGTGACCGAATCGATCAATGCTAGGCTTTCGTCAGTGACAACTTTTGGGCCAGCTCCAAGCCTGCTACAGATGAAGTAGCTCACATCTCCCTTGAATTTTTGGCTCGGCATCTTCGTCTCGGCAGGAGCTGGGAGGGCCTCCACATCTTCTATCGATTTCAGTCCAGCATCGCTTAGAATCGACTTGTCGCCAACCATATAGCTGCTGAGATCATTATCTTGAGGAGGGAAATAATACAAGAGCTTCTGAAGGAGAATGGTTGCATTTTTGCGGTTTGGTGCGATTAGGACAGCATTGGGCCCAGCATCGAAGGTGTAAGCAACCTGTGGGGTTCCTTCTGACTGGTTCCACTTCTCCACAAGGCTAATTATCCTGTGTGATGTATCGTTCATATAGAAGATGGGAGGGCTCGTGTCCAAACATACAGCATGAAATTGGTTGCTATCTGCACAAGTTAACCTGGCAAAGGACTCAAAATTACGAGACTTGATAGCCTCTTCCATTTTCAACACCCGTTCTGGAACTACAGTCTGGGCCCTATATTGCAAAAGGGGACTTGTTTCAACACTGTCTCGCATCCCACTAGTGCTACTTGTTTCCTTCTGCTTTGAACTGACCACCGCTATGATAATAACAAGATCATTCCAGTGTGCCTCATCAGCAAGTTGTACAGCTATGCTGTCGCTTCCATCATTATTTTTTCCCATACACCATTTCACGAATCCCCCATATATACTGCGGCATGCACTTCCAGACCCTTGCCTTGCTATGGAAGAAAGTTCACCATGATCTTCTTTCACATTCATTAGCTTTCCAAGGGTGAAAACAAAACAAGCCAAGCCAGCAGCCGAAGAGGCCAAACCAGCAGCAGTGGGGAAGTTGTTGAACGATGCTATGTGTACATGTAGCTTCCCCCAGTCCTCTTTCTTGATCCTGATCCCCTTCTTCTCATCCTCGACATCTTGAGCACGCTTCCGGATCTCCCTCAGGCAGCTCTGAAACCTCCCTCCTGACAAGGAGATCTCCTTGCCGTTGAGCCACATGCGGTCGGAGGGGAAGGAAGGGCTGACGGCGACGGTGGTGGTGGCGGAGAGGTGGTCGGGGTCGAGGGTGACGCTGATGCTGTCGTTGACGGGGAGGATGAGCGCCTCGTCCCTCTTCCCCCAGTACTTGATGACGGCGATGTTGGTGGGAGATCGGCCGGTGGCCATGAGCACCCACTGCCCCTCCTCCGCCGCCGCCATGGAAGGAGACCGATCTGCGGAACGGAAGCAACGACGGGGAGCGGGAGCAGTCGCCGGCGGCGGCGGAGGCGGGAGGGCGGGAGATCGGAGACGGCGGGGCGGAGACACCGAGGAAGACGAGAGTGAGACCGAATCTT

Coding Potentia
Explanation CPC Score
noncoding -1.00475
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0140100.1 2 497398 T C
Osa02LNT0140100.1 2 498791 G T
Osa02LNT0140100.1 2 499560 G A
Osa02LNT0140100.1 2 499643 A G
Osa02LNT0140100.1 2 499728 C T
Osa02LNT0140100.1 2 500063 T G
Osa02LNT0140100.1 2 500229 A T
Osa02LNT0140100.1 2 499899 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0140100.1 osa-miR167h-3p Translation 4.5 19.575 1 21
Osa02LNT0140100.1 osa-miR418 Cleavage 4.5 6.359 1 21
Osa02LNT0140100.1 osa-miR1847.1 Translation 4.5 19.403 1 21
Osa02LNT0140100.1 osa-miR1846a-3p Translation 4.0 24.232 1 21
Osa02LNT0140100.1 osa-miR1846b-3p Translation 4.0 24.232 1 21
Osa02LNT0140100.1 osa-miR5500 Cleavage 4.5 21.255 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus