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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0140400.1

ATATTTTAGGAATGTTATATGATAGTATGAAGCATTGATATATCATTCTAGGATGCGAACAAACAGTGACACTATGGTTGTAAGTATAGCAGATATAGGTTGTGTTCGGCAGCCCTATTTCAGCTGTGACACAGCCATATTACACAGTAATTTGTGTCACTGCAAGCAGCTGTGTGGCTGCGTTGCAGCGGCTGCAACATGCAGCCGAACACACCAATAGATGGTTTTGTTACAGTAGATTGTAAATACATTTTTAGTCTAGAATAATAGAATTCCTCGTCAGCTTGTTTGCTCTCTAAAAGACACTCATTTCTGATCATCTTCTTAAATCCGATCTATCTGAGTGGATTAATTACCCGATTAAACTGCATGCCTCTTTTGAGCTCTAGCCAGTCTCTAGAGCAACTGTACAGAGGACGTGACAAGCTCACAGAGTAAACACCATGGCAAGATGTCCCAAGAAATATGTGTCGCAGAACCATACTTGCACTTTTGTTCACCAACACATAGTTGATTTTTCCCCAGATGATGGTTAATTTGGAAATCTGATCATAAGAAGGTGAGTAGATCGAATTCCAGGCATAACTTCTTAATAGGGATAGGGAATGGAGACTGGATTCTTTTTTTTCTTAGATATTGAACCGAATCCTCATAGGATAAATCGAATGAAATTTGGAACTTGAAGATAAAAAACAGGATATAAAATAATCTTGTCATTAGGGAGGAGAAGCGGACATGTAGTTAGATCACTCGAGCCAGATATCTGTTTTCAAAATCAACAACAGGAAGAATGAGAAAAAAATAAAAGAGAGGAAAGAACTGCCCGCTTGCGAGAGGATAACGGTGACAGGCGAGAGACCCCAAACGGTGGCACCGACTCACC

Coding Potentia
Explanation CPC Score
noncoding -1.33207
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0140400.1 2 616265 G A
Osa02LNT0140400.1 2 616593 A C
Osa02LNT0140400.1 2 616660 C T
Osa02LNT0140400.1 2 616960 C T
Osa02LNT0140400.1 2 617292 A C
Osa02LNT0140400.1 2 617378 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0140400.1 osa-miR528-5p Cleavage 5.0 19.667 1 21
Osa02LNT0140400.1 osa-miR529b Cleavage 4.0 13.579 1 21
Osa02LNT0140400.1 osa-miR5505 Cleavage 5.0 16.948 1 22
Osa02LNT0140400.1 osa-miR1849 Cleavage 5.0 13.557 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus