\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0140900.1

AACAGTTAACTCCACCATCTCCTATCTTGGTTTTCCATAAGAAGAAAAGAATTACAGGCAACAAGAGTAGCTACCTAGCTTTTTAATGCTCCTGTTCTAAATACAGCATGCCATTCATCGTGTTTGTTCCCACACAACATTTACAGTGCAGTTGCCACAATGGTCCAAGCTTCAGCATGTCATCAACCATTTGCCTGCTTGAAGTGATGCAAGATCCGTGCAGCCAAGATGTCGACCCAAGTGTCCGGCACGCCAGGAAGGCACCAATGCATGCAGTCCTGCCCCCATACAGCCACCGCGTCCTTCTTTCCGAGCCAGATTGCCGGATGCGCATCGGCACGGAACTCGCTCATGTAGGTCAGGTTGAGCAGCTGGATGTCTGTGCCAATCAGGGCCTCCTGAATCGCCGAATTCACTAGCCTTGCTTCTTTGTTCACTCCTCCAAACCTGGGATCGAACCACAAGTCGAGCTCGTGTTCTTGTAGAAGCCGATCAGACACGCAGCTGCCATTGTGATCCCATTCACCTCCATAGAAGTGCCTGGGTGACTGTGAGCGCCACAGTTTCAGTGTTTTACTTGGGACCTCCCTTTCAATGTAAGAGGCCATACTTTTGAGGACTACTTTCAATCCATCGTAGATGCCAAGTGGCGGCTCAATTGGTTTCCCTCCTCGGTAGAAAACAAGGGGGGTCTCTTTTGGGAATTTATCCAGGCCCCACCAATGTCCAGTGTTGAAAATGAGCACATCATAGAACCTGGTGACATTTACCCATTCATCAGCAGGAATGTCAACATCCACTCTGTAAGTTCCCTTTATTCCATCCTTGTGAAGCTCTTTGGAATTCTCTACAGGGTGTACTTGGCGAGGAGAACTGCGCGGTGGTACGCGACGATGACGTCATCCCTGGGGAAGTAGCCGCCGCGCCACGCGCCCCGCCGCTTCCACTTGCTCGCGCCGCCGTCCGCCGACCGGAGCGCGCACAGCAGCGCCACGACCAGGTTCTCCGACAGCGAGTCCCCCACGAGCCCGATCCGCCGCCCCCGGGCCACGGCCAGGAACTCCGCGGCGTCGATCCTCGGGACGGCGCCGCCGCCGCAGCGGGCGGGCGCCCAGGAGAGCGCGGCGACGGGTGGGCGGCTGTTGCGGGGGCAGTTCCAGGCGTTGCGGTGGAAGGGGCAGGAGGAGGTGTAGAGCGGCGGCGGCAAGGGCTCCCGGGTGGGGACCCAGCGGCCGGCGGTGGCGTCGGAGGGGGCGGCGCCGCAGGGGAGCGGCTGAGGCTGAGGCTGATGCGGCGGCGGCCGCGGGGGAGGGGGAGAGGGGAAGAGGAGGAAGAGGGTGAGGGTAATGGGGAGGAGGAGGAGTAGAGGGAGGCGGCGGCGCGGCATTTGGGGGAGAGACCCTCTCCCCGGCGATCGATCGCCGGCGGCGAGGCAGGAGAGCGAGACGGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.763952
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0140900.1 2 935178 A G
Osa02LNT0140900.1 2 935733 C T
Osa02LNT0140900.1 2 937280 T C
Osa02LNT0140900.1 2 936472 A T
Osa02LNT0140900.1 2 934731 T G
Osa02LNT0140900.1 2 935878 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0140900.1 osa-miR6246 Translation 4.5 17.284 1 23
Osa02LNT0140900.1 osa-miR164a Cleavage 4.0 14.785 1 21
Osa02LNT0140900.1 osa-miR164b Cleavage 4.0 14.785 1 21
Osa02LNT0140900.1 osa-miR399h Cleavage 5.0 20.691 1 21
Osa02LNT0140900.1 osa-miR159f Translation 5.0 14.803 1 21
Osa02LNT0140900.1 osa-miR164d Cleavage 4.0 14.785 1 21
Osa02LNT0140900.1 osa-miR164e Cleavage 4.0 14.785 1 21
Osa02LNT0140900.1 osa-miR164f Cleavage 4.0 14.785 1 21
Osa02LNT0140900.1 osa-miR528-3p Cleavage 4.5 23.069 1 21
Osa02LNT0140900.1 osa-miR1850.2 Cleavage 4.0 11.89 1 21
Osa02LNT0140900.1 osa-miR1851 Translation 5.0 17.984 1 21
Osa02LNT0140900.1 osa-miR1880 Cleavage 5.0 18.195 1 24
Osa02LNT0140900.1 osa-miR2864.1 Translation 5.0 22.817 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus