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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0141000.1

ACACAATACAAACACACATCTCCATATATATTGCATGCTTGAGGTTAAACTTTACATAATGCAGAAGCTATCCAGCTTACTCGGCAATCAGCTGGGAGCAATAAACAACAAGCCTGTAAAGTGGAACAAGGGCATGGCAACATCCACAGGCTATCACATTCTGGAAACAAACATGAAAGATGCCTGCACTCCTGGAGAGATGGAGCCTAGACATCTGCATGGTCATGGTGAGGCTTCAGATCCATTTCGACCTGATGAATCGTCCATTGCATGCCCTCCAGTTTCTTTACAATCTCATGGTATTGCCTTGCAATTACATCAAAGTGTGGATCTACACCTTGGTACTCGCGCAACCGTGAAACCGCTTCAGTATAAGAATTGGATGCTTCTTTCGTGGCCTCTACTAGATATTTCCTGATCCTATGTAGTGCCGGTACTGTTTCCTTGGTATAGGTGTCACGCAAGAGATGATGCTCAAGATAGCTTAATTTAGCATTCATTGTCCGGCACCTTTTAATAAGCCAAGTCTTCTTCAGATCATCATATTGATGCTGATGTTCCAATTTCTTGTCTTTAACGAACTGTATAAGTACAGCAAGAATTTGCTCCAGGACATTATAGTGTTCGGCAAATTTTCTATCCATCGAAGCAAGATCGTCTAGTAGAAGGGCCTCTTCCTTTTCAATCTCTTCAATAATTAACTTCACCCTTTCTGGAAGTCTGGCACTTGAAATCTGACTAATGGATGATGAATCCCTTTCATCCATTGCAAACAGATCAGCTAAAGCATCACACTTGGCTTCTAAGCGGGCCTCAATCTCTCTTGCCAGAGTTCGTTGATAGTCAACCATGTCCACGGTCATGGCTGGCTGCTCTTGCTGCACCTGGTAGAGATAATCCGATGTGATTCCAAGAAAACGATCAGGAACACCGCCAACACCAGGCTCAACTGGCTCCGAACCACCAGTACCAGGGGCCGCAGCAACAGTGGCTGCACTTGCGGTGCTGCTGTAGTTATTGTAACTAGTCGAGATTGAACTCGAGCTAGGTGCGGCACTTGTCATGGTGCTATCGAATGAGCTCCTAGACAAGGTGCTCAGCTTCTCTATCTCCTCCTCATGTACATCTCCATCCTGCGAGAGCAGTGGAAGCCTTAACCTCTGCGCAGCCTCTGCAACCGCCAAATGGTGCTCCAATGACTCGTACACCTGCGGGGAGCAGTTGAGCTTCTTCCCAGCGTTGGCGACGCCAGTGGAGATGGCGTGCTGATACTCCTCCACCATAGCAATGGCCTCCGCGTACACAGCCAGTGCCTCCAGGTATCGCGCGCGCTCCGACGCGACCTCCTCCCGCGCCTGGAGGAGGTCGGAGTGGGCGCAGCTGGAGAGGAGGGAGGCGTCGGGGGCGAGGTGGTGGCGCTGGAGCTGATCCACCAGGTGCGCCACCTCCGGCGGCGGCGGAGGGAGCGACGCGGCGGCGGCGGCCTTGGACATCGTCGTCGCCGGCGAATAAGAGGTTCGTTGGTGGTGGTTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.874042
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0141000.1 2 1009895 T C
Osa02LNT0141000.1 2 1009207 C G
Osa02LNT0141000.1 2 1009331 T C
Osa02LNT0141000.1 2 1009441 C G
Osa02LNT0141000.1 2 1009845 G A
Osa02LNT0141000.1 2 1010072 T C
Osa02LNT0141000.1 2 1010141 G A
Osa02LNT0141000.1 2 1011129 G C
Osa02LNT0141000.1 2 1011458 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0141000.1 osa-miR164a Translation 4.0 14.905 1 21
Osa02LNT0141000.1 osa-miR164b Translation 4.0 14.905 1 21
Osa02LNT0141000.1 osa-miR164d Translation 4.0 14.905 1 21
Osa02LNT0141000.1 osa-miR164e Translation 4.0 14.905 1 21
Osa02LNT0141000.1 osa-miR164f Translation 4.0 14.905 1 21
Osa02LNT0141000.1 osa-miR1428b Cleavage 5.0 14.885 1 21
Osa02LNT0141000.1 osa-miR1428c Cleavage 5.0 14.885 1 21
Osa02LNT0141000.1 osa-miR1428d Cleavage 5.0 14.885 1 21
Osa02LNT0141000.1 osa-miR1428e-3p Cleavage 5.0 14.885 1 21
Osa02LNT0141000.1 osa-miR1879 Cleavage 5.0 18.924 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus