\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0141100.1

ATCCATGTACTTGATTAGCTCATGCAATTCACTACTAGATAATTTATTCAGATACAATATTTGATTTTAGTGATTCTGATTCATAGTGTTGATGTTTTTCATGGTCACACCTGAAAAAAAAATCGTTTGAAGAAAAAAAATTGTGTTTGTTTACACAAAAGCATCGAATCAAGCTAGAAAAGCTTGGTACAGATCAGAATAGGGCTCTTGCCATTTTTGATTCTCAAGGACTAAGAGCATATTCAAGATTTTGTAGCTTCAATTGTACATTTTGGTAGATCAAACAATCATATCACAGATTCATCTGAATTTGCATATTTCATTGTAATACAACAAATTAAGGCAGGCAACTAGCTTTTCATGGAAAAAAAAACTAAGGCTGAAGCAAGTACCAGGGACAAAGATACTGGCCATGCAGCCTACTTTATGATTTCATCCGGTGCAGCCACTTGAGCGAGTTCTCGAGCTCAGTATACAACGTCACCTCCGCAAAGCTCTTGCTCTCGATCCCGTAGTCGAACACCTCGTATGCATCCGGTATTCTCCCTGCACGACACAACGCCCTGACGAATGTCGCATAAGCTGGAGCTTCAAGCTTCATCGCGGCACCAACCATGGATTTGTAAACATCGACGGCCTTGTCGAGCTTCTTGTTCTTGCAGAGCCCCATGAGCAGAGTGTTGTATGTTCGCTCATTCGGCTCGCATCCCTTGGCCTCCATCTCCTCGAGGAGAGCAAGCGCTCCCATGGCGTCGCCCTTGACGCACATCCCGTTCATCAGCGAGGTGTATGTGATGACGTCCGGGAAGTGGCCAGCGGCGGCCATGGCGTCGAGATAGGTTCTTGCCTTGGTGACCATCCCGGCGCGCGCGAGGCCGAAGACGAGGGTGTTGTAGGTGACGAGGTCGGGCTCGACGCCGTCGTCCTTCATGCGGCGGAGGACGCCGAGGACACCCGCGGGGTCGGAGGCGGCGCAGTGCGCCTTCATGAGGGCGTTGTAGACGGGGGCGTCGGCCTTGACGCCGTGGTCGGCGAGGACGGGGAGGAGCTGCGCGATCTCCCGGGGCTCCCCGCGGCGGCAGACGGCGTCGGACAGCGCGAGCAGCGCGGGGCGTGGCGGCGGGGAGGCGGGCGAGGGGTGGAGCTCCGCGAGGAGGCCCCTCGCCGCGGCGACGGAGCGGTGGCGGGCGAGGCGGCGGAGGAGCAGCGAGAGGGAGTGCGGCGGGAGCGGGATGGTGCGGGCCGCGGACCGCGCGAGGTCGACCGCCGCGTCGACGTCGGCGTCGGCCGGAGCCGGGGTTTTGGAAGCCTTGGCTGGGGTTTTCCGGTGCCTGGGATTGCTGGGCCTCGGCGGCGCAGGGGGCTGGGAAGCCGAAGCATGGGTGGGCTTGGCAAGGACGGCGAGGGGGAGCTTGGCGGCGCGCATGGCGTGCGGCACCTTCCCCATCGTCCCCGGCGGCGGCGGCGGCGGCGAGAGTTTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.555836
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0141100.1 2 1038682 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0141100.1 osa-miR2055 Cleavage 4.0 15.243 1 21
Osa02LNT0141100.1 osa-miR2105 Cleavage 4.0 11.472 1 20
Osa02LNT0141100.1 osa-miR3980a-3p Cleavage 4.5 17.446 1 21
Osa02LNT0141100.1 osa-miR3980b-3p Cleavage 4.5 17.446 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus