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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0141200.1

CCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAGCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATCATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAGGTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGTATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCAAAGCACACACGAGAACTTCCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTTCAAATTCCGTAAACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTCGACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCCCCTCAAGTTCTTGTAATCATCGTAGCTAAGAAATTTATCCTTGATTTTTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAAGTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACGGCGGAAGGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTTGCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCGCGTGGCCGGTGTGGGTTTTGCTTTGCGGCGGCGGCGGCGCGAGCAGAAGAGAGATATTCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.997834
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0141200.1 2 1071897 A G
Osa02LNT0141200.1 2 1069512 C A
Osa02LNT0141200.1 2 1069770 G A
Osa02LNT0141200.1 2 1069846 A G
Osa02LNT0141200.1 2 1071117 T A
Osa02LNT0141200.1 2 1071175 A G
Osa02LNT0141200.1 2 1071343 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0141200.1 osa-miR1860-5p Translation 4.5 14.757 1 21
Osa02LNT0141200.1 osa-miR2100-3p Cleavage 5.0 14.984 1 22
Osa02LNT0141200.1 osa-miR5160 Translation 5.0 13.025 1 22
Osa02LNT0141200.1 osa-miR5160 Cleavage 4.0 19.248 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus