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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0141600.1

GATCATAAGAACATTATGTTCCTTCACCCAGTTATTTAGCACAGAACACATTTAATCCTACTCGGCGCAGAGAATCAATGGAAAACGCGTGATGTTCAGATCTCACAGTTCCAAGGAAACCACGAACAGGTATATAACACGCAATCACATCAAACGTTTTAAGTGTTCAACACACTCGAAATACTGAGTGAATTCCAAGGTTACTACCATAACAAACAGTTCTGGTATCACGTCTCTAGTACTACAGAGATATTCACCACCACAGGAAAGCTGGGTACCGCCACAGGAAAGCTGGATTCAGCATGGTAGGCAGGGAGAAACACACTATTTCGTGAAGCAGTGTCACTCAATAGATTGCAACACTCAAGTAATCCCCTATCTGGAATCCTAGCTCTGCAAGAGTTTTAGCATCATCTCCCCTTCCATGGCCATAAGAGAAGGTTGAACCCACCTCTTTGACAACGAAACGACCATGCTTATCAGGGTACACGAAAGCAAAAGAAAGCCTTGCATTTCTTTTTCTTGCTGCAAGAGCAACCTCTTTCACAAGATCAGTGAGCTCTCGGAGTGTGGCATCCTTCCACGTGTATATCTGCACTTCATCTTTCGGCTCCTTTCCTCTCACGGCAAACTCTTCATTTTGGTGATGGCCACCAACCTTTGTGAAAACCCGGAGCAGGAGAGGGCACGTCTTCTCGCGATCGACGGGTTCGACGCGCGCGCGAGCCATGGGAGGAGGCCCCCGGTACTGCATCGGCGGCCCTGGCCGCACAGGCCTCATCGGCATCTCGCCCCTTCCCGCCATCGCAACGAGACCTCCCCCTGCCCTGCTCCGCCGCCGCCGCCGCCGATCACTTCAGAAGGGGATGCGAGAGAAGCAAAGAAAACCCTAGTAAACTTTTTGTAGATTGCACCCTG

Coding Potentia
Explanation CPC Score
noncoding -1.06469
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0141600.1 2 1159907 A C
Osa02LNT0141600.1 2 1161011 T C
Osa02LNT0141600.1 2 1160804 A C
Osa02LNT0141600.1 2 1159930 T C
Osa02LNT0141600.1 2 1159969 A G
Osa02LNT0141600.1 2 1160857 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0141600.1 osa-miR1857-5p Cleavage 4.5 18.179 1 21
Osa02LNT0141600.1 osa-miR1861c Cleavage 5.0 19.086 1 22
Osa02LNT0141600.1 osa-miR5501 Translation 5.0 19.052 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus