>Osa02LNT0141700.3

ACAGGAGAACGAATTCTACCCTACAACTTACTGATTTTTCCTGGTCTAATCTTCTGGGCCATCATGTCTTGAATTCCGTTCCAAAGATCATACTATGAACTAAGTGCAGCTTCTGTATGAGAGCTGAGGTGCCACTGATCAGCAGAGATTGCAGAATGATCTTTCTGGGCTTATGCAACTCTTTTCATCTTTGTTGTCACCTCAGGAAAACCTATAATTCATACTACTTCTTATGTGGCCTTCACCTTGACATACTCATCATGATGGTTATTGAAGTTTTCGTTATATAGCATGCCCGTTGGAGAAAGAAGCCGTTGTAAAGCACTTCCAAACCGACCCCACTGAAACAAGACAAGTATCCACCAGCATCCAGGCAAACTACCAAATTTGTTGCGAATGATCATTAGTAGAAAGGTTCCAATGCCAAAGCATGCTCCCATTGATTGACTCAAAAACCTGAGATCTCTTCCAGCCAATAATGTTCCTTCAAGACTATGCACTGAAGGTGTCACCAATAATGCACAGAAATATGGAATCAGCACTTTATGCATCTGTTGGACAACCATAAAATCATTAGTAAAGAGACTAGGAAAAAGCCACGGAACAAGTGTTCCTACTGCCCCCACAGTCGTTCCAGTTATTGCTCCAATCATGACAAGTGATTTCAATAGCATCCTTGCCTTCATCAAATTGCACTTAGCTCCATATATCAACTCTGGCATGAATGACTGTGCAGTTTGTGACAGGGGCTCACCCCAAACAGTGCACATGCATAGGACATTAACCATAACCAAAAGTTAAAAGGTATGAACCTGGTGGGCTGCAAGTGTTATTGCTCCCATAGAAGTTGCAGAATACGTAAGTAACGCGTAAAATGCTACCTTGGAGGTCATTGTTATGAAAACAGGAGCTGCAATTTCAAAAATCTGCAGAAGCTCACTTGATGATGGGATTGTGAATGAAAAAGCTCGAAATCCTCTCTTATTTAGATTTTGCATCATCATAAAAGCTGTGAAACCATAGTTGCCCAGGCAGCGCCAGCAATTCCATATCCACATACAGAACAGAGAAGAAGGTCCCCAACACCATTGATAACACTAGCAGCTGCCAATGCCTTCAAGGGACCCCAAGAATCTTTCATGCCTAGACTAGCACTTTGAGCAACTAAGCCAACCAGAACTGCAGGCCATGCAAAGCCTCTAATCTGTGCATATGTATTGGCAGCAGAAATGATATCATAGTTCCCCGATCCAGTAAACACAGTTAACACTTGAGTCCCAAAAAGCTTGGTGAACAAAAACATTCCTAAACCACAAGTAAGAGCAACAAACAGCAACATAGATACTTGGTGCTGTGCAAGTTCTTCATCCTGCATATAGTAACTGTGCTTATAAATAGAGTGCGGAGAAAAGACATGAAAGTTTGTGCGTTCATTGTTCAAAGTTAATAACCTTTCATAAAATTATAACCACCACTAATTTCCACAAAGTAGGGCTCTAGTAACATGCCAAGCACCAAGCCACCAATATTCTCGCCATACAGAGAGTTTTATAGTTGAAAACAGTTTAGTTTCTGAATTTCTGAGTGGCCTGCAAATTGCCGAGTAATATACATATGTATGTCCTGCTGCAATGTTCTCGTTTGTAGTAAGAAAAAGTGTATAGTTCATGCAAGAGAAATCAAAACATTAACTTCGAAAGTTTTCAATTTCAGCTTGTTATTAGGCATTTTTTGTACTTTTGTTCCATAGTCTTATAGAGGAAAGGGAGGGAGAGATTGTTCACGCCGAACTAAGTTATAAAGCTAAGTAGCTTAGGTTGGCAACAATCAAAATTGGAATGTTAAATTTGTTTTACCACTAAAATTCTAACAGATAAAACAGTATGTAAATCATACTATCAAGAGTAGCTAAGTTAACAATATATGTTTCTGATAACTGCCCAAGCATAGCATATTCCTGCCTATAGTTGTTCATCTAACAAAGAGGAAGGTACACCTTTTTAGCTAAGGAGGTGGCCACCATGTTGGAGGTCGCGATCGAAAGGAACATGAATATATAGCAGAGGTAATCGCAGAACACCGTTCCAGGCCCTAGGGCAGCGAGCTGGAGGGAGGAAGTCTGGCCGATGACCATGGTGTCGATGAGGCTCATGAGGGGCCCGCAGATCCAGAGCCCCAGCGCCGGCCCAGCGAACACGACGATGTCCCGCACCTGCTCCCACAACCCCGCCGTTCCAGCCGCCGCCGCCGCCGGCTCATCCCCATCCGCTCCCGCCACGGCCACCCCGCGGCAGCGGGCGGCGGCGCCACGGGGGAGGCGCGGCGGCTGTGGCTCGGTAAGCGGGCGGCTGAGGACGAGGCGTGCCGCGCGGGCGGCGAGAGCGGGAGTGGGCACGGCGGGAAGGCGGCGGGTGGGGAGGAGCGCCGGGAGCGGCGCGGCGGAGAGGAGGCGGAGGTGGGCGGACATGGC

Explanation	CPC Score
noncoding (weak)	-0.778586

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0141700.3	2	1167478	C	T
Osa02LNT0141700.3	2	1168962	A	T
Osa02LNT0141700.3	2	1169743	G	A
Osa02LNT0141700.3	2	1169750	C	T
Osa02LNT0141700.3	2	1169971	A	T
Osa02LNT0141700.3	2	1172176	T	C
Osa02LNT0141700.3	2	1172735	T	C
Osa02LNT0141700.3	2	1173417	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0141700.3	osa-miR5543	Cleavage	4.0	15.318	1	21
Osa02LNT0141700.3	osa-miR5834	Translation	4.0	14.264	1	21
Osa02LNT0141700.3	osa-miR160c-3p	Translation	5.0	16.505	1	21
Osa02LNT0141700.3	osa-miR166d-5p	Translation	4.5	12.551	1	21
Osa02LNT0141700.3	osa-miR159d	Cleavage	4.0	10.975	1	21
Osa02LNT0141700.3	osa-miR167h-3p	Cleavage	4.0	24.875	1	21
Osa02LNT0141700.3	osa-miR444a-3p.1	Translation	4.5	23.534	1	21
Osa02LNT0141700.3	osa-miR444d.1	Translation	4.5	23.534	1	21
Osa02LNT0141700.3	osa-miR5337a	Translation	5.0	9.79	1	21
Osa02LNT0141700.3	osa-miR5498	Cleavage	4.0	19.737	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus