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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0142100.1

AAAGAAACAAAGATCGCGCTGATTCATCGCTGTTGTAAAAAGAAACATACAAAATCTGACTAAAACCCTGTTTTCCTCAAATACATCTGATCTCTCTCCTTTTCTTTTCATGCTGTTAATGCACAGCATGCCCTCCCTCAGTGTCAAGGACATGTCAAAATCTTACATTAGGTTTGTACAGCCTTGGTACATCAAGCCTCATGGAATATTTTCTTCGACATGCCAAACACAAGCTAAACGAAATCGTTGTGCATTTCTGCTCACTTGCCGCGCTTCAAATCAAACACAACGCACGCGTCTGCGGCTGATTTCATCTGGATAACATTGATCACTTGTTTCAACGCCCAACCAACTAGAGTTGAAATGAAAACAAAGACAGTGAGAGGACTTTGCTTCAGAAGGTTTCCGCACACATTAAGCAAGCTTGTTGACTTCTCATCGGCGAACAGAAAAAGAACTATGTACAGAACCTCCGAAGCAACACAACAGAAGGCCATGAATGGTCGGTGTCCATAATATAACTTCAGAAGCCAATTGCCTGTGTCTTTTACATCCTTGTGGCTAGTCTTACCTGATAGGAACGAACTAATAAAAAAAAGGCGCCATCAAGTAGTTAGCAACATGTAGAAGTAACTAGAGACGCATAACAAAACTATAGAGCATAACTCTTGTCTTTGAACAAAAAAAATGCATCATGAAAAAAGGCATTCTGTCTTTCTGAACAACACGATAGTAAGTGATAATATTCTGCTCCCTTTAATACCTTCCGGAAGAGGATGCACCTACTAGGTGAAGAAAACTATAAAGTGGCACTAACTGAAAAAATGGTTAGAAAACTAACCTGTACATTTGAAACCAATGGCTTGTAATATCCAACCCAAGCAACATCAAGAAAACTAAGCCAGGTCTGTAAAACTGGGAGAGAAGTGCCAACAAACAGGCAGTGCTAACCCTATCTGTTACCATGTCCAGCACAGCTCCAAATGTTGATGCTTGGTTAAACTTTCGTGCAAACCAACCATCCAAGCCATCGCAGAAAAAGCTGAAGAAGTATAGGATAGCAAAGAGCACCCTATTGGAATAACATACGGCAAAAGCAATGAAGTTTATGATGATCCTAAAATATCCAATGATATTAGGGATGTAAAGATAGACTGACGGCGTCTTCTTAGAAGAAGGTTGTGCCATTGGAGATCAGTAGTTATTACTTGCTAGAAGCCTGAAAGCTTCTCCCTTAAATTGTAGTCCTATATAGGAATTCCTCACGAAGGGGTCGGGGAGGAAGACCTAGCCGTCGCCGACGCTAGGGCGGCCGCGCCGCCGCGCCGCGATTCCGGGGAGTCGCCGGAGAGGAGGGGGGCGCGGGGATGGATGCGTGGAAGCGAGAGCCGAGTCGCCGCCGCCGCCGATGGATTGATTCGATTT

Coding Potentia
Explanation CPC Score
noncoding -1.23098
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0142100.1 2 1231361 C A
Osa02LNT0142100.1 2 1231817 A G
Osa02LNT0142100.1 2 1232380 T C
Osa02LNT0142100.1 2 1232970 T C
Osa02LNT0142100.1 2 1233429 T C
Osa02LNT0142100.1 2 1233605 A T
Osa02LNT0142100.1 2 1233607 A T
Osa02LNT0142100.1 2 1233898 A C
Osa02LNT0142100.1 2 1234178 T C
Osa02LNT0142100.1 2 1234297 A G
Osa02LNT0142100.1 2 1232423 C G
Osa02LNT0142100.1 2 1232547 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0142100.1 osa-miR5828 Translation 4.0 13.992 1 21
Osa02LNT0142100.1 osa-miR171d-5p Translation 4.5 20.735 1 21
Osa02LNT0142100.1 osa-miR171e-5p Translation 4.5 20.735 1 21
Osa02LNT0142100.1 osa-miR818a Cleavage 3.5 14.509 1 22
Osa02LNT0142100.1 osa-miR818b Cleavage 3.5 14.509 1 22
Osa02LNT0142100.1 osa-miR818c Cleavage 3.5 14.509 1 22
Osa02LNT0142100.1 osa-miR818d Cleavage 3.5 14.509 1 22
Osa02LNT0142100.1 osa-miR818e Cleavage 3.5 14.509 1 22
Osa02LNT0142100.1 osa-miR2866 Cleavage 4.0 17.767 1 20
Osa02LNT0142100.1 osa-miR5155 Translation 4.5 15.43 1 24
Osa02LNT0142100.1 osa-miR2872 Cleavage 4.0 22.001 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus