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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0142200.1

CATGTTAGAATTTGAAAATTGTATATGAATTTGATCGAAATGGTGTTTCATTCGTTTTCACCATTACAACATCTCGATTCTGCGTAAAGAGCAAAAGTAAATGTTTATATATGACTTTGCGAGTCCTCTGATTTACTCCACATAGTAGCAGATTACAAGAAACAAAGGCTCCACGTAATATATAGCTGGAATTCCTTTTCCAAATGTAAAAGTACAGATTTTTTACTCCATTGCCTCTCTTTCTCATTATCCAACAGCCGGCGTTGTATATACATCGAAGTCCTTCATCTGCCCTCAATGGCATCATGGCATGTGCCACAGGCCAATGTCAGCCATTGGATCATCATCTCCTCCTCAATTCCTCCATGCCAAGACAGTGAATGTGCCAGTGTTCATCCAATAAGCAGATTGGCTCAGAGGATTAGTGACAGAGATCAGGTAATGCTACAATGTGTTCCTCTGCCCTACAAATTTCCGTGCAACACCGAAGATGAGAGCCTTGGTCAACAGCCCTTGATCAAGAGTGCAAGCCAGAGCAACAGCTCCACCGAGCACAAGGAACCTTGCTACTCGGTTTTTCGCGGGTTTCTCTTCTGCTTCCACAATATCTGACTGATCGTCGTTGGATTCCAATCCACGAACAAAATTGTCACCGACCTTGGTATTGATATGCGCCATCAAGGCACTCTGAGACAATGGCTCCCCAGCAGCTCTCGCTTTCTGATAGGCCCGAAGTCCAGGTTCGATTCTCTTTACACACCCCCACATTCCCTGCCGAATGCCAATCTTTGCAATCTCATAGGGAATACCCATGTCCTCATGGTGGAACAGGAGAACCTCACAAGCCGTCAATCCACTGTTCCCTCTTCTTGATTCCACTGGACGGATGCACCAGCTTGAATAGTATACATCTACTCTACGAGGTTTGTTACGACGTGGGATGGATGAGCATGGCACACCCTTTGTAACACAATAGTATGCACCTCCCAGTTTCCATATCCGACGAGCAATGATGTACTCCCTGTCACTACAAAAGAAGGGGAACTTGCGGACCCAATGCACTTTCATCGTGCCTGTTGTCTGACACTCTTCCAAAGTCTTATGATAGATAAGCATATCATCCCACTTGTTGGACATCCGGAATTGATCGTCGCCGAAGAAGTCCCTCACCTCCTCCGGATTTGCATTCTCAAATATAGTACTACTCTGGTATTGTGGAGGTCCAGTCTGTGGATCCCTCCTCCATGCCTGGTAGGTCATGGCGGGCAGCGCCTTCTCCATCATCTTGATCCATGCCGGGCCGCCATCCCTGCCCTCCACTAGCCTCCAGAGGTTCATCAGGTCATCCTTCCCCACCGCCAGCTGCTCGTTCGCCATCTCCGACGACCCAAGCAGGGAGGAGTCGTCCTCCTGCTGCGGCGGCGGCGCCGGGCCGGCGGCGCCGACGTACTGCGCGAGCGGGGCGCGGATGCGGGCGGGGAGCTGGGTCCTCCAGAACTCCAGCGTGGCGAACGTCAGCGGCGCGGGGTGGCTGTCGGCGGTGGCGACGAGGCCGGCGGCCCAGCGCGGGCGCCACGCCCAGCCGAGCAGGAGGCCGAGGAGCGCGGCGGCCCAGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.963915
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0142200.1 2 1289374 A G
Osa02LNT0142200.1 2 1289378 G A
Osa02LNT0142200.1 2 1289904 A C
Osa02LNT0142200.1 2 1289978 A G
Osa02LNT0142200.1 2 1290640 A G
Osa02LNT0142200.1 2 1290839 G A
Osa02LNT0142200.1 2 1291485 T C
Osa02LNT0142200.1 2 1291659 A G
Osa02LNT0142200.1 2 1291718 T C
Osa02LNT0142200.1 2 1291915 A G
Osa02LNT0142200.1 2 1292130 T C
Osa02LNT0142200.1 2 1292163 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0142200.1 osa-miR6255 Translation 4.5 9.158 1 22
Osa02LNT0142200.1 osa-miR7693-5p Cleavage 5.0 20.387 1 24
Osa02LNT0142200.1 osa-miR2867-5p Translation 5.0 21.527 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus