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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0142400.1

ATTTTCTTAGCTATCTCCACTTCTCAACCAATCACAACTTTACCTGTTTAATTTTACTTACTTTTAAAAATAATTTTATAAAACCACACCTATTATTATCATAAAATTTTCTTTTATTTTAATATTCGTGTGCAACCCTAAAAATCATATTAGTTCTCTTGCCACACAAAGCCACGCCACCGCCGAGAGAAGGAAACCGGAGGCGACGAGAGGGATGGCTTCCACGCTGCGGCGCGCGGCCGTCCTCCGCCGTGCCGTCTCCTTCGCAGCGCCGTCTCCCGCCGTCCGCCGCGCCGCCCGGCTCCCGATCGCGCCGCGCCGCCCCTTCTCGCAGCCGTCTGCAGCGTCAGGTGATCAGCCTCCCAAGTCTGCACTCGACAAGTTGAATCCATTATTTGAGGAGGTCATGAGAAAAGGAGTTTGTTCGATGGATCAATATATGACACTTTGTTCGATGGATCAATATATGACACTGGAAATCGTCAAAAGCATCCAACATGCTCGTATAGAGTTCAATCGAAAGGAAAATGACTGACCAGGATGGGAAGGCTGGAAGCCTGGAACGCAAGAGATTATGACAGTGTAGTAGTCTACATCTGTGAATTAAATTACTGAGACACTAGCTTTTGAATCATGCTGTAGTATGTTACTAGTTAAGTTCATTTCTCATTATCAACCGTGTCCAGTATAAACTTAACTGCCAATGCTGCTCGATGGAGGTCTTTATAACATATGATATGTCACTTCTGCTGGACGAACTATGTATGAAATAGATGGTAGAGCTAACAAGTGTGACTGGGTGTATTTTGGACCTTTCACACTATTTCCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.875182
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0142400.1 2 1361753 T A
Osa02LNT0142400.1 2 1362243 C G
Osa02LNT0142400.1 2 1362293 T A
Osa02LNT0142400.1 2 1362305 C T
Osa02LNT0142400.1 2 1362452 A G
Osa02LNT0142400.1 2 1363001 T G
Osa02LNT0142400.1 2 1363057 G A
Osa02LNT0142400.1 2 1363330 A G
Osa02LNT0142400.1 2 1363332 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0142400.1 osa-miR5162 Cleavage 4.5 18.037 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus