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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0142700.1

GCTCCATCCAATTGCATGCATGATCCATGGACATTCGATAAAAAGGGGTATCAGATAGTTGACACTTTACAATGCAAGGCATGAAGCATGAAAAAATGGTGACCAAGTACAGTTTCATCCCAAAAGGCCTTCTTTCCCCAGAAGCCGCCCAAATACAATTAAACAATTTTTGTAATGAATCAGTTGTGTTTCCTTTTTACTCTGTAAGAACAAACTATTTACACCAGAAGTGACATATTTGTAACAGGTTGCCTATGGCAAGGAAAAAACAGCTCAATCCTGACAAAGTTAACAGCCGCATTCTATGGTTCTATCTCACTTCAAAGTCAGATATCATACTCTCTTCGCAAGAGCCACGTTTTTGCAGTGATGACAACTGGTATTCGACATCTCAGCAGGACTTGCCGACTTGGCTCAATCATACATTTGGCGAACATACTGCTGAAGGCAGAAGTACATGAACAGGGCACTCCTAGCTGCATCAGACTCCAAAGAGAGGTAAAGCTACTTTGATGAATGAGTAACAAAGTGCCCCTGTGAAAACATAGCTGTCTACTCGGTCAAGCATCCCACCATGGCCAGGAATGAGTGATCCAGAGTCCTTCACACCAGCATCACGCTTGATCAGAGACTCGACAAGATCCCCGAACAACGAACCCAGAAAGATCAAGATTCCGTAAGCAGTAGCACTCAGCAGCGATCTTGGCCAATGTAAGACGCTTGAAAGAAGCACAGTGGTCAGTACACAGCCAGTTAGACCAGCTAAAGCACCCTCCAAGGTCTTCTTAGGGCTTATATCAGTAAGAGGAGTGCGACCAAATGCCCGTCCACAAAGGAAAGCAGATGTATCAGCGGCAATAATGCTACTAATAGAAATCAAGGTTGCTACAAGTCCAACTGTCCAGTGAGCTTGCCCACCAAGAAGTATTGGCCAACTGTATGCAATTTTTGTATTTAAGGCAGGAGCAGCTAGTCCAGATCGGAGCTTAACCCAGAAAGAAGGAAGATAGCCACAATAAAAGAGACCAAAAACTGAACTAGTCAGCTGTGCAAAACGAGGATTTCCTCTTTGCAATAACAATGATATCGCAATAAGGAATGCAGAAAACGTCACGGTAACATCCATATGCCCATAGTACAGGGTAAGGATAGGCATGAGAGCGCAGATGGCAGAGCAGACGCGGGACACGAAGCGCGGCGGCGGCGTGCCTCCCCCGCCGGCGGTCCCGCGGACGAGCCCGAAGTACTCACGAGCTCCGGCGAGGACAGCCGCGGCCACGGCGGCCGCGAACACCCACCCGCCGGCCACCACGACGCCGCCCGCGCCCACCCCGATGGCGACGCCCACGAGCACACGCTTCTGAAGCTGCCGCGACTTCTCCCTCTTCCTCTCCGCCTCCTCCCCGCCGCCGCCCCCGCCGCCGCCTCCATCGGCGGAGACAGCGGCGGCCGCGAGGAGCGGGGAGCGGCGGAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.847267
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0142700.1 2 1405352 A C
Osa02LNT0142700.1 2 1405467 A C
Osa02LNT0142700.1 2 1406368 C T
Osa02LNT0142700.1 2 1406622 A C
Osa02LNT0142700.1 2 1407175 C T
Osa02LNT0142700.1 2 1407666 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0142700.1 osa-miR2864.2 Cleavage 4.0 17.203 1 21
Osa02LNT0142700.1 osa-miR1863c Cleavage 5.0 18.448 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus