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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0143000.1

GTAAGTTCATTTCCATCGTGTTAATAAATCAGGTTCCAAGTTCAACACATGCTAGGCTACAGATGTGTCCTAGCCAGTCCACCATGCCGCAAATTGTATTTGTACATCAATGCACAACAAGTCTCAGTAGCACTGCTGCTGCATCGTTCACGTCATTGCTCCTTCCAGATGCGGCCGGTAACCCGCAGCTTGAGCTCCTGCCTGTTGCCGCCGGAGAAGAAGAGGGCCATGTTCCGGTGGATGATGAGGCCGTCGAAGCTGTCCCGGACCTTCTTGTGGCTGTCCCTGATGCTCCGGGGGATGCCCTGCCATGTCAGCTTCCGCCCGTTCCCGCCCACCTCCAGGCTGTAGCAGAAGTTCCGGGCCTCGCTGTCCTCGCCCATGAACCTCAGGAACGCCATGTACACTGGTGCCATCCCCAGCAGGAATGCCTCAAAATGCAGGCAGAAGTGCTGTCCAAAACACTTGAAAACCGTCAGCATCCATGTAGCGTTTTCCACTTCATAAGGGTTGGACTTCACATAACGGTGGTTAAAGGTGCAGCCTTCATGCAAGTCCACCTTATGGTCGTTTATGAGATGAGAGACAAGCATCGGAACATCGCCAGCAATCAGGCATTCTGAACCTGCATATGGACAACTATATGGCCTGAACCTGCAGAGCTCCTCATGCTTAAGTTTGTTTTGGTAAGGATGAATCTCAGCACAGCCTAGGCTTTGATATTTGCATGGAAGCTGAAGTGACTCAGCCACCTTCTCAAGAGCCAAACATCTGATATTACCCAGTTCTTGGCGACAAGTAGGGCAATGATTCTCCACCCTATGCTTGCAGTTAGAGCATATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.273537
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0143000.1 2 1481904 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0143000.1 osa-miR818f Translation 5.0 23.433 1 21
Osa02LNT0143000.1 osa-miR1437b-3p Translation 4.5 14.161 1 24
Osa02LNT0143000.1 osa-miR399h Translation 5.0 16.693 1 21
Osa02LNT0143000.1 osa-miR2105 Cleavage 5.0 19.344 1 20
Osa02LNT0143000.1 osa-miR2864.2 Cleavage 5.0 17.561 1 21
Osa02LNT0143000.1 osa-miR2873b Translation 4.5 12.006 1 21
Osa02LNT0143000.1 osa-miR5147 Cleavage 5.0 18.66 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus