\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0143200.1

GGAAGAAAAAAAATTGTGACATATATTCAACTGAATCAGATTCTTTGTCGTAGCAAAATCACAATGTTTGGGACGGCATTATCATTATTTTGATTGGTACAGTTTGACAACAATAACACATTTGGACTGAGCATCACACGTACTCAACTTTCTCTATTGTCACCAACTGAATGCTCAAAATTTTGTTAGCTTCTTCATCTTCTGTTCTTCAATGTTTAACAGTCTTTCTTTTCTTTCATGAGCTACTCGAAGATGGGTAGATCAAGAGGCTTATTCTTTGACCCATCTTGAGTGTCTCTTGAAGATGATGAGAGAGAGAGAGCAGAGAAGGCTTTTGTATCAGATTCTTTATCCATGTCCAGGAAGAACCGATGCCATCTAGAGTCTGATGTCAATTCTGGGTGAAAAGCAGTAGCGAGGATGTTCCCTTGCCTTACAGCAACAATTACCCGATCTTTCGAGTACACTTCTTCCTCAACACCCTCTCCAGACGCTATTGTAATACTGGGTCTATCCGATGGAACAGGACAATCCGCCAGTACTTCAACATTTGAACCTACATCCAAGATAGCAGGTGCTCGTATAAATACGCCACGGCATGTATCGCTCCCTCCTTCCTTCTCTGCAAGCATTGGCACTGAAAGTTCCGTTTCAAAGCTTTGAAGCTGGCTCCCAAAAAAGTTCCGGTGGACAGTACAATCTAGTCCTCCAATAAGCTCCTGACCTCCGGATTTTTGGCCTACTGCCTTGTTAGCTAGGAAGATGAGTCCAGCACAAGTTCCCCAGACAGGCCTTCCTGTACCAACAAATTCTCGAAGTGCAGGAAACAGGTTGTGGTAGTTGGCGAGTTTGGCCATGGTGGTGCTCTCGCCGCCGGGGATGATGAGCGAGTCGAGCCCCTGCAGCTGCTCCGGCTTCCCCTCCTCTTCTCTCGCTCGCGTTGGGATGTGTGGCTTTGGCTTTGAATTGGGGGGTGGGAAGAAGTGGACGGGAGAAGCACGTTGCCGTGGCGGCGGCCGCCACACGCACGCGCCTCCACCTCCACC

Coding Potentia
Explanation CPC Score
noncoding -1.07118
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0143200.1 2 1566373 G C
Osa02LNT0143200.1 2 1568065 G A
Osa02LNT0143200.1 2 1566209 T A
Osa02LNT0143200.1 2 1569288 A G
Osa02LNT0143200.1 2 1569357 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0143200.1 osa-miR5796 Cleavage 4.5 22.886 1 21
Osa02LNT0143200.1 osa-miR812a Cleavage 3.5 13.881 1 22
Osa02LNT0143200.1 osa-miR812b Cleavage 3.5 13.881 1 22
Osa02LNT0143200.1 osa-miR812c Cleavage 3.5 13.881 1 22
Osa02LNT0143200.1 osa-miR812d Cleavage 3.5 13.881 1 22
Osa02LNT0143200.1 osa-miR812e Cleavage 3.5 13.881 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus