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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0143700.1

GGGAAGAAGCCTCTCTTTCTTTCTTTCGTTCTTTCTTTTGTTTTCACTTTCTTTTCTTCTTCCCATCCTGATCTTCTTCCCGTCCTGATCTGGAGCAATGGCGACGGAAGAAGAAGCAAGGGAAGCAACAGATGGCCAGGAAGTTCAAGTGGAAGCTGCGACTGATTTGCAAGCACAACTTGACAGCAAGCTTTCTTCTATTAAAGAGATCAAGGGCGAGGCACAAACCATGGGTTCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.826256
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0143700.1 2 1617624 T A
Osa02LNT0143700.1 2 1618306 A T
Osa02LNT0143700.1 2 1618521 G A
Osa02LNT0143700.1 2 1618796 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0143700.1 osa-miR535-5p Cleavage 4.0 11.616 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus