\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0143900.1

ATCACAGCTTCTGTTTCTTCCAAGATGATGACTTAGTGTCAAAAACTATCACATTTCTTCCATGTCGCTTCCTGATCCAGGACTTAGTGTCAGATTTATCAATAGGAGCTGGATGCTCTCCAACTTCATGGAATGTTCTCTTCTGCCTAACCAAGTCCCTGATTCCTGTCACATGAAGATCCTTCTGTCCGCTGACAACATGGTAAACATGATCTGCTTTCAGAGCTCCCCGGGAATATTGTTTCTCAAACCTTGCATCACTGCCATTGCTATGACCCATATGCATTCGCAGTGACTGATTGCCTTCATTCCTTGCTGGGCAAACAGTTGATTTGCGATTAGCTGGAATGTTCAAAGGCAAAGACCTAGAAGCCTCTCTATCAAAGTTATTGCTTAGACTTCTTATTGAAGAGTGCGTATGCCTCATAACAGCGCCCAAAGAGTGTGTTATGTGCTGATTCTCCATCAGAGTTGGAGTTGGCAGTGGCCTGATTATCGGCTGTCTCTCCATCAGAGTTGGAGTTGGTGGTGGCCTGATCACCTGCTGTCTCTCCATCAGACTTGGAGTTGGCGGTGGCCTGATGGCAGGACCCATGGAGCATGGGTTTCTTCCCATAAATAGCTCTGTCATTTGTTGGATAACAGCTTGTAACTGCTTTGGAGCAACATCAAACTCATGCCACCATACTTTTCCATCAGAAGGAAGTCTAAAATTATTAAACTTAGCAGCAAGGTAGAGGGACCCTGCTGCTATGTAGTGAGGTTTAAACTGCACAACCAAAGTAGTCCGAATCGCATCATTTATTAGATTCACCGCAACTTGTTTCACTTCCATCTGGAAAATGCCCAGCTTCTTGAGAGCGAGCTTTAGTGGCTCGTAAGGATGCTGTATGTTGAAATCAAACCTAATTGTTGAAAGCAACAGCGTCTCCCCTACCAAAATGAGCTCTTTCTGCTTCTCAAGAACTTCCTTCTGGTAGATTCTGTGAGCAGCGTTACAGTCTTTCCGGTACATGGTTTCATATGCCACAATGATGACACGTTGTAATGGGCAAGGTGTGTCTTCAATCTTCGAAGCAAGAAATACGCAGACAGTTGCAACGGTTGGTAAATAGTACTAATAGAAAGCATTGCCTTCAAGTTTGATAAAGTCGCTCCCAAGAATCACGTGTCTTGCCCAAAATTGCAATTTTTGGTGCTCCG

Coding Potentia
Explanation CPC Score
noncoding -1.12053
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0143900.1 2 1734488 C A
Osa02LNT0143900.1 2 1734961 C G
Osa02LNT0143900.1 2 1735086 C A
Osa02LNT0143900.1 2 1736047 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0143900.1 osa-miR5525 Cleavage 4.5 12.131 1 22
Osa02LNT0143900.1 osa-miR2928 Cleavage 5.0 15.512 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0143900.1 2 S29(t) Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus