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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0144200.1

CTAGAAGCTGAAACTTTGTTCATCACAGAAACGTGCAACAGCCCAAAAGCATTAAGTTGTTCTTTTTATAACCTAGAAGTTGTTCATCACAGAAACGTGCAACAAGCCAATATATATTGGATATAACCTAGAAGTTGTTCCTTTTTTTTCTCTGAAGACTGAACTCCAATGGTTGGCCCATGATTACATATACATGTGCAACACAAGAATGGCTGCACCGAAAAACTTAGTCTAAGATAGGAAAAAGGTAACATGCTGGTTGCTGCTAAGAGCAGCTAAATATCTCGCCGGAAGAGATTGTAAGCAGAGATGAGGGCACTGATAGCAAAAACCAAGAATGCCATGAATGAAATGGCGATGGAGCTGTTCGCCATCTTCGGGAAAGGGTCGCTTCCCCAGTTGTCGATCCAATCGCCTACTCGTGCAGTTGCTGATGACGACGAAGATATCAGAAGGTATGCCAGCACCTGATCCATGAAGAAGTCGAAGTAATCTCCTTTGCGCCGCGGATTCAAATGCTTGTTCCTCCTCATGAGATCTGCGAGCACAAAGAACTGGAGCACCGAGTACACGAACCCAATCACGTTCACCGCCTCAGAGTACCGCAACTGGCTGTAGTTGCTGTAGGAGTCAAGGGCGAAACCCTTGCGGCTGTCGGCGGCGAGCACCGCGAGCGCCGCGAGGCAGAGCAGCGCGGCCGCAACCCGCGCCACCAGCGCGGTGCGCTGCAGAACAGCCGTGCGCCGCTTGCGCAACAGGATGTCGGGCACCACCCGGTGGTCGTGCTCGACCGCCCTAGCCGGCACTCTCGGTGCCGGAGCCGGAGCCGGCCTCGGTGCGGGAGCAGGCGGAGGCACCAGCACAGGCGCCGCTGGCGCTGGAGGAGGAGGAGGCGGGGATGGATCCCATGCCCGCGGCGGCTGCGGGGGTGGCTGGAATTGCGGCTTCTTCCTCGGCGGCGGCGGGGGGCGATACGGTTTGGCGGTGCGGCCGCCGTTCCACGAGTACCATGAGCGGCCATCCCCGCCGCCGACGTGGCCCGCGGCGCTCGGGGGCACGTACTTGGCGGCCGCCGCGTGCGTCTGGGAGGAGACGACGATGGCCGCGGAGTGCGGGGGAGAGGCGGAGGAGGACTGCGGCGGGGTGGGGGGCCTCTTCTCCTCGGCCGCCCACTCGTCGCCCGCCGCGCTGTGCATCGGCGTCACCGGCGGATCCCCCGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.882899
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0144200.1 2 1826846 A G
Osa02LNT0144200.1 2 1827273 A C
Osa02LNT0144200.1 2 1827778 G A
Osa02LNT0144200.1 2 1828022 G A
Osa02LNT0144200.1 2 1829167 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0144200.1 osa-miR1868 Translation 4.5 13.267 1 24
Osa02LNT0144200.1 osa-miR2864.2 Translation 5.0 14.63 1 21
Osa02LNT0144200.1 osa-miR2866 Cleavage 4.5 11.648 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0144200.1 2 S29(t) Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus