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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0144300.2

CTCTACTTACAATTTCTGAATGTTGTCAGTGTACGTGTACATACGACTTTAGATTGACCTTGGATTTTCATAAATTCCCAACACCCATGTACTTGTAGCAAACTTAGCTAGTAGAAATGAAATTTTGATTTAAGGATAAGGATCCATATTATCCATTAATTGGGTGTTACAGCATAAATAACTAAACTCGACATTTTACTTATTTCTTCAACATGTAGCAATTTCAGGCGTTGTAGCAGATGCTGACGGGCGGTCGTCACTTCCTAGTTCTTCTCCTTGTAACTGTTGCAGCTATCGACACAAGCTGCAACATCAGCATCTGTTGCCCGTGCTGATTCTCCGGTTGCCGCATCCCCGATCGACGACGTGCAGAGCTCCCTGCAGCCTGCATCTCCGGCGAACACCGGCGCCGCCGCCGCCGCCGTCGACTCGCCGCCTCGGGTACAGTTGTGAATCGGCTTCAAGACGCAGCAGGTGAAGCAGAAGAGCTTGCAGCCAGCTCGAGAACTGCCTTGCTCGCAGTCAGGCAAGCAGTCATCGTAGCATCTGCCGATCTCGGACTCCGCTGACGCCAGCTGCAGCTGGCCTGACGTCAGCAGGATGAGCAGCAAGATGCAGGCAGCAGCAGTAGCTGCCACCACTCCATTCCTCCCCATTGATTCTTTGGTCTTGTTCAGTCCTTGGTGAAGCTTGCTGAATAATTGTTGTTCTACTGCTGAGATAGAACCTGAGACATTTTATACTAGCATTGAGGGCTTGAAGAAGTAAATGTTCTTTGGAGAAGTTTTCTCCAAATATTACTGTGATAACTGATCTATCATCCTGATTAGCCTAGTTCCACAAGAAGCATTGCTTCTTTGTTGCAACTGCATGCG

Coding Potentia
Explanation CPC Score
noncoding -1.16737
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0144300.2 2 1838210 A G
Osa02LNT0144300.2 2 1838262 G A
Osa02LNT0144300.2 2 1838407 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0144300.2 osa-miR1435 Cleavage 3.5 13.79 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0144300.2 2 S29(t) Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus