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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0144600.2

AGTCAGGAAAAACCAATGATATGAATTAGTAAAAAGATTTACAAGGAAAAACCAATGATATCTCCAAGCAAAATATATCATCTGATTTACAAGGAAATTGGGAAATAAGAAATATAAATTAAGCAAAGAACTTTACTGTCCCCTCACGGACCCAATATAAATTAAGCATTTGATTTTAATAAATATAATCTGAAACGGAGGGAGTAATAGCTGATTAAAGCACCCAATAATATATTTCGCTGATAAGCTTGTACATCTCCGACTTGTGCTTCACGAGGCGGAGCACTCCAGTGTCGTCGCAGCGCTCCACCTCGACGGCGGTGAACACAGCGAACAGCTCCGGGTTGTGTTGTTCGTCGGCGTCGAAGAAGCCGGTCTCGAAGAACCTGGCGATGCAGAAGTTGGCAGAGCCCAGGTGCACGAGGTGGGAAGACACCTGCGTCAACGCCTTGGGCGGCGTGTACTCCAGAGGAAGGAGGCTGTGCTGCTCCGGCTTTCTCCCGCCGCTAATGAGATCAGACGCAGATAGGACGTTGTCGGTGCCGGACGCGAGGCCATAGAACAGGCCGTGCTCCGGCACGTACACGGCGAGGCCGGTGAACGGCATCGCGCACCACTCGCCGCCGCTCGCCACCGCGCTCCACTCTCCGCGCTCCGTGTGGAACCTGTAGGTGCCGACGCCTTGCTTGGATATCCAGATGTCCACCCCATCCACCACCGCGTAGGAGTCGAATTGGAAGTCGCCGCGTTGCTTCACCATGTAAGGAGGCGGCGGGAGAGTGTGGCAACACCAGTCGCCGTCGGCGTCGGTGAAGCTCTCCCTACTATAGGTTAGGGCGTGGAAGCAGTGATCATGGCCGCCGGTGAACGGGCCCTGGATGTCGTCGAGGATGTAAAGGTCGTCGTCGCCGATGGTGAGGGACACGGGGGAGAACTTGGGCATGGGGAGGGTGGGCAGGGAGCGGACGACGTGCTCGTCGGGGTCGTACAGGAGGGTGCGCCCCGTCAGGTCGGTGCCGACTATCTTGTTATGCCTTCCACCAAGGAGCATGAACTCCATCGTCTCCATCGGGCAGACCGATGCACGGAAGCTCATCACCGGGCATGGCAGATTGCCGTACTCCACCGCCGCCGCGCCGTCGTGTGCTCCGGCGTCCAGCGGCGTTGCCAATTTACGGGGGAGGAAGAAGCGTGACATGTCCATGCGCCGCACTGTGTAGTTGCCTTGGACCTTATCAAGCACCAGATTCACAAATCGCCGGTAACTCATAACTGATCTTCCTCCTCCAAATTATGAACAGGAATCTACTAGATATGTATATGCACTAGTTGCATATACGATCGATCGATTAGTTGGATTTATCCGAAATTCTTTGTGCTTCGGATGTTAATTGTTCATCTTGTTGATTCCAACACATCGAGGCAGCATGAATATCTGTACCTCGATTTCTCCTGCGATTTACGAAAAAACCGACTCCGGATTTACTTCTGTCCGCCGGAATCCAGTCGAGTGTTCATCTGGATCCGATCGATATCCACCGGATTTCTCCTACTCCTCCTCCACAACCCGGTTGAATGCAAGCAGATGGAGAAGCGAATCAGGCGTTGGGTTGCGGGGACGGGCAGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.11647
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0144600.2 2 1947922 A G
Osa02LNT0144600.2 2 1948000 A G
Osa02LNT0144600.2 2 1949302 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0144600.2 osa-miR1423-5p Cleavage 3.5 18.531 1 24
Osa02LNT0144600.2 osa-miR1846a-5p Cleavage 5.0 18.645 1 21
Osa02LNT0144600.2 osa-miR1846b-5p Cleavage 5.0 18.645 1 21
Osa02LNT0144600.2 osa-miR1846c-5p Cleavage 5.0 18.645 1 21
Osa02LNT0144600.2 osa-miR2091-5p Translation 4.0 13.883 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0144600.2 2 S29(t) Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus