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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0144700.2

AACTGAGAACGGGAGATCGATAAGATTGAGTAGAAAAAAAATTAGCTTTACGAAATTCAAAGTTACGCGTATACAAAACCTGGACATGGGCAAAGAACATCTCCAATTTACAGTAATTCAGTAAACAACAGATCACAAATCTCACAGAACAGGACGAAACACATGAGAAAAATAGTCTAGTTCTTGGGGATGTTCTTGCCGACGATCTTGGCAGGAGCGATGCGGAGGAGGTTCCCGGGCTTCCCTGGAACGGCGCCCTTGATCATGACAACTTTCAGGTCGTTGTCGATCTTGACGATCTTGAGCTTCCTGATCTTGGTCTTGGTTCCTCCCATCCTCCCGGGCATCTTCTTCCCCTTGTACACCCGACCCGGCGTCGTCCCGGCACCGATCGATCCCAGAGCTCTGTGGCTCTTGGAGCCGTGGGTCATCAGCCCTCGCTTGAAGTTGTGCCTCTTGATGCCACCTTGGAACCCCTTGCCGATGGACTTGCCGGAGATGTCGACGAGGTCGCCCTCCTTGAACATGTCGGCGAAGTCGAGCGGCTGGCCGGGGTCGTACCCGTCGACGGACTGGAGGCGGAACTCCTGCAGGTGGCGGAGCGGCCGATGCCCACGGCCGCCATGGCCATTCTTGGTGCCCCGGATTCGAGCGGGGATTTGCTCACTCCAGCAGTGTCCCGGCTTCGCTTGCTGCTTTGGTTGTTTTTCGTGTTGAATTCGATTGGATTGGGGTTTGCGGCTAATGCCCCCTTATCCTCCCGCCTGCAGAGAGGCGCTTTTTAGGAATACGCTTTCTTTGCCGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.233135
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0144700.2 2 1973624 T C
Osa02LNT0144700.2 2 1973638 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0144700.2 osa-miR1853-3p Cleavage 4.5 12.944 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0144700.2 2 S29(t) Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus