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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0145000.1

AAACAAATATGGTTAAATTCAATCAAGTGGTCTTCTTCTTTTTCTTTGACTTGAGCATAACAAGACCCATGAACACGCTTAAGAAAGATAGGAGAATCACGCCAGCAAGCACTGGGATCAAAATAGCATACTCTTGAGGCAGAAAGTACTTGTGGACGAAGTGATCACTGTCAACAAATGGCAGGATGATGACCCAGAAAGTATAGTATGTAAAGATGGATAGACTTGTCAAGGTTAAAATAAAGCCTACTGCCTTGTCCCCCAATTCCATTTGTGCAGATATTGTACAAATCTAAACTTGATTCAGATGATAAAATCTACTTCCTACATGCACACAAAAACAGTCTGCATTAGAAAGCACACCAAATATCGAATTGCATAGAAGTAAAATCTCATGAAAGTTAGTCCTATTTGGGGAAATAAAACAAGATATAATAAACCCAAAGTATTTATACAGCACAAAGGTGGCAGAGGTGGCAACGAGATGGAGACGGAGAGACAGTGACAGGACCTCAGCAGCTGCAGCGTCGTCCCTCACACAGTGGCTTGTTTACCGCTGATCCAGATGGGGATCCTGCTCCCGTCGCCGATGGCGATGCTGCTGTTCCGGTTGGAGGGGAGCGGTCCGCAGTGGCCGTGAATAGAGGCGCGACCAGTGAGATCGCAAGCGAAGATGGTGAGGGGACCGCGGGATCCGGTGCTAGATGCTCCGAGACGACCAGGGTTGGGGTTAGGGTTAGGGTTTGGAGAGCGAGAGCGAGGAAGGGGGCGGGGGGCGATGCGGGACTGTGGAGCGGGGCGCGGGGGGATTGGGGAGGCGGATTTCTCTATCAGGTCAGGAGGGGCGGACAGGGGGTCGACGGCGCGCGACGGCGATGATGCGGCATGCGACGGCGGATCGGTTGAGGGCGACGGATGCGACGACGGCGATGGGGATCGGTTGAGGGCGAGCCGGCGGCGGGGATAGGTGGCGGCGAGACGACGGTTGCGACGACGGCGGAGCGGCGGCAGTCGAGGGCGGCGTCGACGGCGGTGGCGCAGCGTGAGAGGGAGAGATTAAGGTAGACGGGGGTTTGGGCGTAGGTCGGGGTTGGGGA

Coding Potentia
Explanation CPC Score
noncoding -1.07639
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0145000.1 2 2141991 T C
Osa02LNT0145000.1 2 2142073 A C
Osa02LNT0145000.1 2 2142428 C G
Osa02LNT0145000.1 2 2142510 C A
Osa02LNT0145000.1 2 2144160 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0145000.1 osa-miR394 Cleavage 5.0 24.445 1 20
Osa02LNT0145000.1 osa-miR2118e Translation 4.5 18.996 1 22
Osa02LNT0145000.1 osa-miR2118p Translation 5.0 18.996 1 22
Osa02LNT0145000.1 osa-miR2118r Translation 4.5 18.996 1 22
Osa02LNT0145000.1 osa-miR2927 Cleavage 4.5 24.987 1 23
Osa02LNT0145000.1 osa-miR2927 Cleavage 5.0 19.424 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0145000.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0145000.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0145000.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus