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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0145400.1

TTTTCTTTCTTGGTGCGGCTTTTTTTAAGCACATTTCTGCCTTTTTTTTCTTTTTCTAAGGTGCAGTTTTTTCTTTCCTTTTCTTTGCACCTTTCTGCCTTTTCTTTCTTTTTTTTATTTTTTACTATTTTTTTCAACAAGAACTGACCATTGACCTCAAACAGGGTCTCAAATGTAAATATGAATATTACAGGTACTTAAATGCTAAGTGCAAAACTAAAATTAGATCACCTCAAAAATGGAATGCTCATGTCATGTAGGTTCCGTTTTTATAAAAATATCTCAAATCGGCAACCACTAAAATACCCAACAATGTGATGTAATGCCCTAGAAAAAAAGTAGAATACCGTAGAGGATATATTGGAAGTCCCTAAGGTTTTGGTGTTTGAAATTAGAAGAAAAACAATAGTTATACGCTAGCTGGGCTAGCTTTCGGCCAGCCCAAGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.867846
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0145400.1 2 2493085 A T
Osa02LNT0145400.1 2 2493105 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0145400.1 osa-miR5802 Cleavage 5.0 10.354 1 24
Osa02LNT0145400.1 osa-miR5835 Translation 3.5 14.919 1 24
Osa02LNT0145400.1 osa-miR1425-3p Cleavage 4.5 13.138 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0145400.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0145400.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0145400.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus