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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0145500.1

ATGGAGGAGACGAGAAGGCAGCGGCGGCGACGCAAGCGCGAGTGCGAGTGTCAACCGCGTGACGGCGCGACGGCAACACTGCGCTCTCCCCGGCGGCGGCGCTCTCCCCTCCGCTGGCCACCTTCCCACCGGCTTTGGGAAGAAGGAAGTCTGCAAGGATACTGCTTTTTTGCGGCATCAGCAAATGTTGATCCCTGAACCTTTGAATATGTATATTGTTGATGCAACCTTTGAATAGAACAAATGTTCAGACTTGTTTAATTTATTTAATTTGTCAGGTCGTCTCCTGCTGCTCGTCAGCTCTCCACTCATCTTGGACTTGTTTAATTTGTGATGTTTCCATTTTCATTGGTTCATACTTTCAGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.956104
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0145500.1 2 2518083 T C
Osa02LNT0145500.1 2 2518756 T C
Osa02LNT0145500.1 2 2516896 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0145500.1 osa-miR5076 Cleavage 5.0 11.161 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0145500.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0145500.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0145500.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus