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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0145600.1

GGGGTGTAGTCTTGGCCGAAGTTATAACGGCGCGACTTGTGCTTGACGACGCGGAGCTTCCCGCCACGGCCGCGTACCACCTCCACGCCGGTGAGCATGGCGAAATTTATTTCACCCCTTTCTCTGCGATCAACACTGAACATCTTGGCGACGCACAGCTTGCCGCCGCCCAGGTGGACGACCTGCGATGCGTACACCTCCAACTCCCTCCTCCTCCGGTCGTCGCTGTGGCTCTCCACCGAGAACCCCTTCACCTGGAGGCTCGCCACCGGCGGCTGCGGCTGCTGGAACGCGGAGGACAGATTCCACGCTCCGAGAATGGTGCCATCCATGTCGGAGATGCCGAACCAGAGGCCGTGCTCGGGGACGTGCTCGGCGCGGCCGCGGAAGGGCAGCTCCCAGTCGCCGGCCTTGCTCCACGCGGAGCTCGCGGTGTCGAAGGAGTAGGTGCCGTTGGTCGTGGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.657591
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0145600.1 2 2572596 G T
Osa02LNT0145600.1 2 2572608 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0145600.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0145600.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0145600.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus