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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0145800.1

GCAGCTTTGCTTACTTCGATTTCATTTTTTCTCAGGTCAAGAACAAAATTTACATCAATGCGCGGTTGCAATCTGAGTAGTTATCTTTTACTCCGTACAGTGATGACGCAAAACTTACAGGAGATTAGCTACTACAACTAATTACCCTTCGCATGTCCATGGAAATAAGGTAGCATATATATATACATTAATTCTGAACCAAGTCTCCGTATTTCAGGCTCCTTGCAGCATATGGCTTTACTCTCAGCTTGCTATTCTTGCCCAACTGCTTGTGGAGTTGTGGGGTGAAACAGGTATCACCACCTGCAGAAGAAGTTCTAGTTCTGAAAGACAACATACCTTCCATGATACATTGATGCCTTGTTGCCTCCAGATAGGCTCAGAAGTCTATCATACCAAAGATGCTCTCTACTGAAGGATTCACTAAACAACCTTTCATATTTTCATCTTTATTTCCTAAACCTAAACTCAACCTTTTAGTAATGGACACAATTTCTCGGTCCAGGAATACAGAGAATGCGACCAATAAGAGGATTTTAAAAAAAAATTTCGAAGGGCTATACCTATACTGTACTGCACTAGTCACTAGATAAGTCATGGTAAGAATAGGGCCTCAAGGTATAGTTTGATGTACAACTGGTTGCTCCTATAGACATAGGAGGCTATAGAAGACAAGGGGTATGAAAGCGTTGTCGAGTTGGGCTGTATATGCTTCCAATAAACCGCTCAATGTCACAGCTACCAAAAGTGATATCCAATGCTGTGAAAGTATGTATCCACTTGAAGCTAAGAGTGACAGCAGGATTGAGCAGGCTGCTAATACAGAAGTTATGCCTGCTGCTGTGCCCTTAATTGTTTTCTTTCCTGTCTTGCTCCATCTTAGGACACCATACTTATAACCTATCATTGATGCCATGGTATCACCAATACCCAAGCTGAGAATTCCAGCAAATGGTGTAAGAGGTCGGTCATTGAATCCTGATGACATCCATTTAGGAAGTGCACATCCCAGCAAGAGTGAGAAATGACTAACAATTAGAATCTCCGAATCGCGGTGATCAGTGAAAGCACTCATGAACTGATGCACAATATGCCCAAGAGGGTATATTTCCCAAACTCGAACCATCTCCAATATTAAGAAAACAGCAAATGCTGCACCAAATGCCAAGTCCAAGAAATCAGGCTGAAATATTACTGCAGGAGAGAAAATTAGGACAGCAACGAGATGGTAATACTTGCGCAAAAGAATCCTCTCCGTTTTGCTTTGTTTTGATATACTGTAGAACCTTCTAATTGATACATATATCACAAATATCCAGTTTGCGCATAAAGCAAGCCGTTCACGTGAATCGGTGAAAATATAGTTAAAAACCCAAACAAATGGATGCACTTCAAAACCTTGAATAAGACGCGTCCATGATGGCACTAACAACAATAGTGCTATCAACAATGAAACATAAAATACACCACAGTCAATTCTCTTCTGTGTGCATTCCTCAACTGTTTGTGTTCTTTGACTCTCCAGTTTTCTACAGTAAGCCAAAACTTGAAGGGAGCTTTTGTATAACAAGGGGAGAAGAAAAAGACCAAGCAAAACCCCCTGAATAACTGTGCCTATCTCGTTTCGAGTTCCAGGTGCGCGAATAAATGCTTCTGATGATACGGAGAACTCCATCTTTGAAAGAGTATGAGCCAGCATATCACCACAGTAAAGAAACAAGACCACTTGAGACCAAAATGGCCTCCCCAAAAGATGAACATGAAGGGAACTTCTCTAGAATATGCTGGATTAAGATCACAGCAGCCACTCCATGACACAGCAAATACACCAAATTACTCATCACCAGCAGACCTCCATCAGTCTTCAGTAAAAGGTGAAACAAGTATGCCAGGGGATATAAAATGATGAGCAACAAGCCGTATTTCGAAGCTATAGAATTTCCATTGCTGGGAGACTGCCGTAGATGCCAAACAAAAAATGCTAACATGCTGAGGCAGCTAACAGATACTGCCCAGTACTGCATTTCAAGGTATGCATATTCTTCACGTCCATTAGGATCGGCTAGTAAGACCCTATAAAGTTGAATTAACCGTGAAAGCATGACACTAGGCAGAGTAGTGGCACCAAGAAGTATGCCTGATGAAGCACCCGGCCTGGTCCTGAACCGGCGGAGCGGGGATGAGGACGCGGAGGCGGAGGCGGAGGCGGAGGCATCCACGGCGAGCTCGACGGCGAGGGCGGCCGCGGCAAGGACTGCGAGCGGGGCGGCGAGCTGGGCCGGCGCCGCGAGCGCGACGCGGGCGACGAAGAGGAACACGACGAGCCTCTCGCCCGAGACCACCGCCGGCGCCATCGCCATCGCCGGCGACCGAG

Coding Potentia
Explanation CPC Score
noncoding -1.15154
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0145800.1 osa-miR6245 Cleavage 4.5 14.668 1 21
Osa02LNT0145800.1 osa-miR2864.1 Cleavage 4.5 22.314 1 21
Osa02LNT0145800.1 osa-miR2864.1 Translation 5.0 16.479 1 21
Osa02LNT0145800.1 osa-miR2876-5p Translation 4.5 17.614 1 21
Osa02LNT0145800.1 osa-miR2873b Translation 3.0 14.984 1 21
Osa02LNT0145800.1 osa-miR5494 Cleavage 4.0 18.138 1 21
Osa02LNT0145800.1 osa-miR5524 Cleavage 4.5 13.879 1 21
Osa02LNT0145800.1 osa-miR5524 Translation 5.0 10.86 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0145800.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0145800.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0145800.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus